Job Description Q47718 Confidence 92.04% Date Thu Jan 5 12:37:09 GMT 2012 Rank 24 Aligned Residues 65 % Identity 12% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.														.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Query Sequence		K	E	C	P	L	N	S	G	Y	L	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	P	E	K	P	D	G	R	R	A	V	L	R	S	Q	V	L	E	L	H	G	I	S	H	G	S	A	G	A	R	S	I	A	T	M	A	T	R	R	G	Y	.	.	.	.	.	Q	M	G	R	W	L	A	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																									.																		.	.	.	.	.
Template Conservation																																																			.
Template Sequence		L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	.	P	S	I	F	A	W	E	I	R	D	R	L	L	S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N
Template Known Secondary structure			T																	S			S					S					S	S	S																.	T	T													T	T	S	S		T	T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		69	70	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	M	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions