Job Description Q47718 Confidence 99.01% Date Thu Jan 5 12:37:09 GMT 2012 Rank 7 Aligned Residues 82 % Identity 11% Template c3nf9A_ PDB info PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	Q	V	W	C	G	D	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S	G	S
Query Conservation
Alig confidence														.	.	.	.																							.																				.	.	.
Template Conservation														.	.	.	.																							.																				.	.	.
Template Sequence		S	P	G	I	W	Q	L	D	C	T	H	L	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	.	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	.	.	.	V	K	T	V	H	T	D	N	G	S	N	F	T	S	T	T	V	K	A
Template Known Secondary structure			T	T										.	.	.	.	T	T									T	T	T	T								S	.	S																	S		.	.	.							S	S
Template Predicted Secondary structure														.	.	.	.																							.																				.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	G	D	T	G	S	G	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	W	W	A	G	I	K	Q	E
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions