Job Description Q47718 Confidence 98.33% Date Thu Jan 5 12:37:09 GMT 2012 Rank 17 Aligned Residues 85 % Identity 13% Template c3l2tB_ PDB info PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) Resolution 2.85 Å

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		106	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		V	T	E	P	N	Q	V	W	C	G	D	V	.	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G
Query Conservation														.
Alig confidence														.																																	.									.														.	.
Template Conservation																																															.									.														.	.
Template Sequence		P	Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	M	T	G	F	T	W	L	Y	P	T	K	A	P	S	.	T	S	A	T	V	K	S	L	.	N	V	L	T	S	I	A	I	P	K	V	I	H	.	.	S	D	Q	G	A	A	F	T	S	S
Template Known Secondary structure					T	T	S											S		B	T	T	B									T	T	T									S	S	S	S	.									.				T	T	T				S				.	.									S
Template Predicted Secondary structure																																															.									.														.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.
		185	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	S	Y	C	G	D	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	A	E	W	A	K	E	R	G
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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