Job Description Q47718 Confidence 98.70% Date Thu Jan 5 12:37:09 GMT 2012 Rank 12 Aligned Residues 76 % Identity 11% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	W	C	G	D	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S	G	S	Y	C
Query Conservation
Alig confidence												.	.	.	.																						.																							.	.	.
Template Conservation												.	.	.	.																						.																							.	.	.
Template Sequence		H	L	W	Q	M	D	N	T	H	W	.	.	.	.	N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	.	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	T	V	L	.	.	.	H	L	H	S	D	N	G	P	C	F	T	A	H	R	I	E	N	L	C
Template Known Secondary structure												.	.	.	.	T	T									T	T	T	T								.	S	S	S																S			S	.	.	.						S						S
Template Predicted Secondary structure												.	.	.	.																						.																							.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		191	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	L	G
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions