Job Description Q47718 Confidence 98.63% Date Thu Jan 5 12:37:09 GMT 2012 Rank 14 Aligned Residues 121 % Identity 13% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	V	L	E	L	H	G	I	S	H	G	S	A	G	A	R	S	I	A	T	M	A	T	R	R	G	Y	Q	M	G	R	W	L	A	G	R	L	M	K	E	L	G	L	V	S	C	Q	Q	P	T	H	R	Y	K	R	G	G	H	E	H	V	A	I	P	N	Y	L	E	R	Q	F	A	V	T	E	P	N	Q
Query Conservation
Alig confidence																.	.	.	.	.												.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.												.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	L	A	E	E	E	H	N	K	W	H	Q	D	.	.	.	.	.	A	V	S	L	H	L	E	F	G	I	P	.	.	.	R	T	A	A	E	D	I	V	Q	Q	C	D	V	C	Q	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	D
Template Known Secondary structure																.	.	.	.	.												.	.	.										T						T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.												.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.						.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																											.	.	50
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	C	G	D	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S	G	S	Y	C	G
Query Conservation
Alig confidence											.	.	.	.																									.																		.						.	.
Template Conservation											.	.	.	.																									.																		.						.	.
Template Sequence		H	W	Q	V	D	Y	T	H	Y	.	.	.	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	.	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	A	.	P	K	S	L	Q	.	.	S	D	N	G	P	A	F	V	A	E	S	T	Q	L	L	M	K
Template Known Secondary structure											.	.	.	.	S	S									T	T	T									S			.																S		.		S				.	.			S
Template Predicted Secondary structure											.	.	.	.																									.																		.						.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		192	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	G
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		134	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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