Job Description Q47718 Confidence 97.36% Date Thu Jan 5 12:37:09 GMT 2012 Rank 18 Aligned Residues 157 % Identity 11% Template c3hosA_ PDB info PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Resolution 3.50 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		R	S	Q	V	L	E	L	H	G	I	S	H	G	S	A	G	A	R	S	I	A	T	M	A	T	R	R	G	Y	Q	M	G	R	W	L	A	G	R	L	M	K	E	L	G	L	V	S	C	Q	Q	P	T	H	R	Y	K	R	G	G	H	E	H	V	A	.	.	.	.	I	P	N	Y	L	E	R	Q	F	A	V	T
Query Conservation																																																																		.	.	.	.
Alig confidence													.														.	.	.	.	.																																			.	.	.	.
Template Conservation													.														.	.	.	.	.
Template Sequence		D	A	E	L	Q	A	L	L	D	E	D	.	D	A	Q	T	Q	K	Q	L	A	E	Q	L	E	.	.	.	.	.	V	S	Q	Q	A	V	S	N	R	L	R	E	M	G	K	I	Q	K	V	G	R	W	V	P	H	E	L	N	E	R	Q	M	E	R	R	K	N	T	C	E	I	L	L	S	R	Y	K	R	K	S
Template Known Secondary structure												S	.	S									T	T	T	T	.	.	.	.	.	S												T	T										S
Template Predicted Secondary structure													.														.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.																								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		E	P	N	Q	V	W	C	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	.	.	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		F	L	H	R	I	V	T	G	D	E	K	W	I	F	F	V	N	P	K	R	K	K	S	Y	V	D	P	G	Q	P	A	T	S	T	A	R	P	N	R	F	G	K	K	T	M	L	C	V	W	W	D	Q	S	G	V	I	Y	Y	E	L	L	K	P	G	E	T	V	N	A	A	R	Y	Q	Q	Q	L	I	N	L	N
Template Known Secondary structure		G	G	G	G											S	B										S	S	S											S	S												T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		163	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		E	T	R	.	.	.	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S	G	S	Y	C	G	D	T	G
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		R	A	L	Q	R	K	R	P	E	Y	R	V	I	F	L	H	D	N	A	P	S	H	T	A	R	A	V	R	D	T	L	E	T	L	N
Template Known Secondary structure									S												S	T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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