Job Description Q47718 Confidence 98.90% Date Thu Jan 5 12:37:09 GMT 2012 Rank 10 Aligned Residues 81 % Identity 10% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	Q	V	W	C	G	D	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S	G	S
Query Conservation
Alig confidence														.	.	.	.																							.																							.	.	.
Template Conservation														.	.	.	.																							.																							.	.	.
Template Sequence		E	L	G	T	W	Q	M	D	C	T	H	L	.	.	.	.	E	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	.	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	W	P	I	T	H	.	.	.	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K	M
Template Known Secondary structure			T	T										.	.	.	.	T	T									T	T	T	T								S	.	S															T	T	S					.	.	.							T	T	T	T
Template Predicted Secondary structure														.	.	.	.																							.																							.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	G	D	T	G	S	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	W	W	I	G	I	E	Q
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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