Job Description Q47718 Confidence 98.86% Date Thu Jan 5 12:37:09 GMT 2012 Rank 11 Aligned Residues 124 % Identity 9% Template c1k6yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase Resolution 2.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	V	L	E	L	H	G	I	S	H	G	S	A	G	A	R	S	I	A	T	M	A	T	R	R	G	Y	Q	M	G	R	W	L	A	G	R	L	M	K	E	L	G	L	V	S	C	Q	Q	P	T	H	R	Y	K	R	G	G	H	E	H	V	A	I	P	N	Y	L	E	R	Q	F	A	V	T	E	P	N	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.											.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.											.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	K	A	Q	E	E	H	E	K	Y	H	S	N	W	.	.	.	.	.	.	R	A	M	A	S	D	F	N	L	P	.	.	P	V	V	A	K	E	I	V	A	S	C	D	K	C	Q	L	K	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	G
Template Known Secondary structure																	.	.	.	.	.	.								T			.	.												T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.											.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.							20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																											.	.	50
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	C	G	D	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S	G	S	Y	C	G
Query Conservation
Alig confidence											.	.	.	.																							.																						.	.	.
Template Conservation											.	.	.	.																							.																						.	.	.
Template Sequence		I	W	Q	L	D	C	T	H	L	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	.	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	V	K	.	.	.	T	V	H	T	D	N	G	S	N	F	T	S	T	T	V	K	A	A	C	D
Template Known Secondary structure											.	.	.	.	T	T									T	T	T	T								S	.	S	S																S				.	.	.												S
Template Predicted Secondary structure											.	.	.	.																							.																						.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		192	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	G	S	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	A	G	I	K	Q
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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