Job Description Q47718 Confidence 98.92% Date Thu Jan 5 12:37:09 GMT 2012 Rank 9 Aligned Residues 79 % Identity 11% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	P	N	Q	V	W	C	G	D	V	T	Y	I	W	T	G	K	R	W	A	Y	L	A	V	V	L	D	L	F	A	R	K	P	V	G	W	A	M	S	F	S	P	D	S	R	L	T	M	K	A	L	E	M	A	W	E	T	R	G	K	P	V	G	V	M	F	Q	A	I	K	A	V	I	I	R	A	G	S	S
Query Conservation
Alig confidence						.										.	.	.	.																									.																				.	.	.
Template Conservation						.										.	.	.	.																									.																				.	.	.
Template Sequence		S	S	P	G	.	I	W	Q	L	D	C	T	H	L	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	.	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	V	K	.	.	.	T	I	H	T	D	N	G	S	N	F	T	G	A	T	V
Template Known Secondary structure			G	G	G	.										.	.	.	.	T	T									T	T	T									S	S	S	.	S	T	T													S				.	.	.
Template Predicted Secondary structure						.										.	.	.	.																									.																				.	.	.
Template SS confidence
		56	.	.	.		60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		187	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	Y	C	G	D	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	A	C	D	W	A	G
Template Known Secondary structure						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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