Return to main results Retrieve Phyre Job Id

Job DescriptionP77378
Confidence98.75%DateThu Jan 5 12:28:21 GMT 2012
Rank16Aligned Residues119
% Identity18%Templated1t9ba1
SCOP infoDHS-like NAD/FAD-binding domain DHS-like NAD/FAD-binding domain Pyruvate oxidase and decarboxylase, middle domain
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   191.... ....200.........210.........220.........230.........240 .........250.. .....
Predicted Secondary structure 




..















..






.........
Query SS confidence 




. .












































. .











. . . . . . . . .




Query Sequence  LSKAK. . RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE. . RYIGVSGVLLKS. . . . . . . . . DLYLT
Query Conservation 
  
 ..


  


    
       

  


 

 

  

  

 
  .. 


 

  
 
......... 



Alig confidence 




..

































...







..











.........




Template Conservation 
  






 
 
  
   
   
  


  
 

  
  ... 

     

   
  
          
  




 
Template Sequence  INLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ. . . GLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIA
Template Known Secondary structure  T
SS
GGGGGSTTTT


GG...GTTSS
TTSTT
STTS

S
Template Predicted Secondary structure 















...





















Template SS confidence 















































































   296...300.........310.........320.........330...... ...340.........350.........360.........370..
 
   258.260. ........270.........280... ......290.........300.........310..
Predicted Secondary structure 
............








.








Query SS confidence 



. . . . . . . . . . . .





















.




























Query Sequence  LGIS. . . . . . . . . . . . GQIQHMVGGNGAKVIVAINKDK. NAPIFNYADYGLVGDIYKVVPALISQLSR
Query Conservation   


............

 

  

  
  




 
 . 



  

 


 
   


 
 
 
 
Alig confidence 



............





















.




























Template Conservation 

               
            

 

 
          
  
 

    
  
   
  
Template Sequence  VGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFP
Template Known Secondary structure  S



TTTS
SGGGSSTTS
S
GGGSSSSS

SS
TTS

Template Predicted Secondary structure 







































Template SS confidence 



































































   373......380.........390.........400.........410.........420.........430.........440
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions