Job Description P17846 Confidence 98.35% Date Thu Jan 5 11:36:18 GMT 2012 Rank 28 Aligned Residues 160 % Identity 21% Template c2y0fD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.																												.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Query Sequence		I	L	D	Y	P	A	R	P	L	K	T	G	L	L	E	I	A	K	I	H	K	G	D	F	R	I	T	A	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	I	I	A	G	V	P	E	S	.	.	.	.	E	K	A	K	I	E	K	I	A
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation
Template Sequence		A	K	V	S	K	A	R	D	L	V	W	V	Y	R	E	L	A	R	R	T	Q	A	P	L	H	L	G	L	T	E	A	G	M	G	V	K	G	I	V	A	S	A	A	A	L	A	P	L	L	L	E	G	I	G	D	T	I	R	V	S	L	T	P	S	P	K	E	P	R	T	K	E	V	E	V	A	Q	E	I	L
Template Known Secondary structure				B	S	S																	S		B				B					S	S																		T			S									S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.						.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.																																			.
Query SS confidence																																	.	.	.	.	.																																			.
Query Sequence		K	E	S	G	L	M	N	A	V	T	P	Q	R	E	N	S	M	A	C	V	S	F	P	T	C	P	L	A	M	A	E	.	.	.	.	.	A	E	R	F	L	P	S	F	I	D	N	I	D	N	L	M	A	K	H	G	V	S	D	E	H	I	V	M	R	V	T	G	C	P	.	N	G	C	G	R	A	M	L	A
Query Conservation																																	.	.	.	.	.																																			.
Alig confidence												.	.	.	.						.	.	.										.	.	.	.	.																								.											.
Template Conservation												.	.	.	.						.	.	.																																						.
Template Sequence		Q	A	L	G	L	R	A	F	A	P	.	.	.	.	E	V	T	S	C	.	.	.	P	G	C	G	R	T	T	S	T	F	F	Q	E	L	A	E	E	V	S	R	R	L	K	E	R	L	P	E	W	R	A	R	Y	P	G	V	E	.	E	L	K	V	A	V	M	G	C	V	V	N	G	P	G	E	S	K	H	A
Template Known Secondary structure			T	T	T	S	S		S	S		.	.	.	.						.	.	.				S	S																													T	T	G	G	.	G							S		T	T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure												.	.	.	.						.	.	.																																						.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.					.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		490	.	.				.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		E	V	G	.	.	.	L	V	G	K	A	P	G	R	Y	N	L	H	L	G	G	N	R	I	G	T	R	I	P	R	M	Y	K	E	N	I	T	E	P	E	I	L	A	S	L	D	E	L	I	G	R	W	A	K	E	R	E
Query Conservation					.	.	.
Alig confidence					.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.
Template Sequence		H	I	G	I	S	L	P	G	A	G	E	E	P	K	A	P	V	Y	A	D	G	.	.	.	.	.	.	.	.	.	K	L	L	T	I	L	K	G	E	G	I	A	E	E	F	L	R	L	V	E	D	Y	V	K	T	R	F
Template Known Secondary structure		S								T	T			S						S	S	S	.	.	.	.	.	.	.	.	.								S	T	T																	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.										.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions