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Job DescriptionP17846
Confidence100.00%DateThu Jan 5 11:36:18 GMT 2012
Rank4Aligned Residues310
% Identity16%Templatec2v4jA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.... .....60 ..
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Query Sequence  EKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRF. . . . . . . . . . HGMYQQ. . . . . . . . . . DD
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Template Sequence  ESGPWPSF. . . . . . . VSDIK. QEAAYRAANPKGLDYQVPVDCPEDLLGVLELSYDEGETHWKHGGIVGVFGYGGGVIGRY
Template Known Secondary structure  GSSSS

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   63......70.........80.........90. ........100.........110........ .120.........130.........140
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Query Sequence  RDIRAERAEQKLEPRHAMLLRCRLPGGVI. TTKQWQAIDKFAGENTIYGSIRLTNRQ. TFQFHGILKKNVKPVHQMLHSV
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Template Sequence  CDQPE. . . . KFPGVAHFHTVRVAQPSGKYYSADYLRQLCDIWDL. RGSGLTNMHGSTGDIVLLGTQTPQLEEIFFELTHN
Template Known Secondary structure  BSSTT....T
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   85.... 90.........100.........110.........120.... .....130.........140.........150.........
 
   141........150.........160.. .......170.........180.........190.........200.........210.........
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Query Sequence  GLDALATANDMNRNVLCTSNPY. ESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTT
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Template Sequence  LNTDLGGSGSNLRTPESCLGKSRCEFACYDSQAACYELTMEYQDELHR. . . . . . . . . . . . . . . . . . . . . . PAFPYKFKFK
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SSSB




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   160.........170.........180.........190.........200....... ..210.......
 
   220.........230 .........240...
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Query Sequence  VVIPPQNDIDL. HANDMNFVAIAEN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FDACPNGCVASIARSDFSVIGTWKDDIKIDAEAVKAYVAGEFKPNAGAHSGRDWGKFDIEAEVVNRCPSKCMKWDGSKLS
Template Known Secondary structure  SSTT
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   218.220.........230.........240.........250.........260.........270.........280.........290.......
 
   244.....250.........260.........270.........280.........290.........300.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTD
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Template Sequence  IDNKECVRCMHCINTMPRALHIGDERGASILCGAKAPILDGAQMGSLLVPFVAAEEPFDEIKEVVEKIWDWWMEEG. . . .
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   298.300.........310.........320.........330.........340.........350.........360.........370...
 
   302.......310.........320....... ..330.........340...... ...350.
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Query Sequence  RKNAKTKYTLERVGVETFKAEVERRA. . . GIKFEPIRPYEFTGRGDRI. GWVKG
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Template Sequence  KNRERLGETMKRLSFQKLLEVTEIAPVPQHVKEPRTNPYIFFKEEEVPGGWDRD
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   374.....380.........390.........400.........410.........420.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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