Job Description P17846 Confidence 100.00% Date Thu Jan 5 11:36:18 GMT 2012 Rank 2 Aligned Residues 504 % Identity 23% Template c2akjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast; PDBTitle: structure of spinach nitrite reductase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.
Predicted Secondary structure										.	.																																																														.	.	.
Query SS confidence										.	.																																																														.	.	.
Query Sequence		S	E	K	H	P	G	P	L	.	.	V	V	E	G	K	L	T	D	A	E	R	M	K	H	E	S	N	Y	L	R	G	T	I	A	E	D	L	N	D	G	L	T	G	G	F	K	G	D	N	F	L	L	I	R	F	H	G	M	Y	Q	Q	D	D	R	D	I	R	A	E	R	A	.	.	.	E	Q	K	L	E	P
Query Conservation										.	.																																																														.	.	.
Alig confidence										.	.																																								.	.	.	.	.	.																	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		E	R	D	G	F	W	V	L	K	E	E	F	R	S	G	I	N	P	A	E	K	V	K	I	E	K	D	P	M	K	L	F	I	E	D	G	I	S	D	L	A	T	L	S	M	E	E	V	D	.	.	.	.	.	.	K	S	K	H	N	K	D	D	I	D	V	R	L	K	W	L	G	L	F	H	R	R	K	H	H
Template Known Secondary structure				T	T						G	G	G		S	S											S		T	T					T							T	T							T	.	.	.	.	.	.	T	S									T	G	G	G	G	G	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		R	H	A	M	L	L	R	C	R	L	P	G	G	V	I	T	T	K	Q	W	Q	A	I	D	K	F	A	G	E	N	T	I	.	Y	G	S	I	R	L	T	N	R	Q	T	F	Q	F	H	G	I	L	K	K	N	V	K	P	V	H	Q	M	L	H	S	V	G	L	D	A	L	A	T	A	N	D	M	N	R	N	V
Query Conservation																																		.
Alig confidence																															.			.
Template Conservation																															.
Template Sequence		Y	G	R	F	M	M	R	L	K	L	P	N	G	V	T	T	S	E	Q	T	R	Y	L	A	S	V	I	K	K	.	Y	G	K	D	G	C	A	D	V	T	T	R	Q	N	W	Q	I	R	G	V	V	L	P	D	V	P	E	I	I	K	G	L	E	S	V	G	L	T	S	L	Q	S	G	M	D	N	V	R	N	P
Template Known Secondary structure		T	T									G	G	G																T	.	T	G	G	G							T	T	S									G	G	G										T	T	T				T	T		S	S	S	S	B
Template Predicted Secondary structure																															.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		156	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		L	C	T	S	N	P	Y	.	E	S	Q	L	H	A	E	A	Y	E	W	A	K	K	I	S	E	H	L	L	P	R	T	R	A	Y	A	E	I	W	L	D	Q	E	K	V	A	T	T	D	E	E	P	I	L	G	Q	T	Y	L	P	R	K	F	K	T	T	V	V	I	P	P	Q	N	D	I	D	L	H	A	N	D
Query Conservation									.
Alig confidence									.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	N	P	L	A	G	I	D	P	H	E	I	V	D	T	R	P	F	T	N	L	I	S	Q	F	V	T	A	N	S	R	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	I	T	N	L	P	R	K	W	N	P	C	V	I	G	S	H	D	L	Y	E	H	P	H	I	N	D
Template Known Secondary structure		B			T	T	T	T	T		T	T		S	S														T	T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S			S	S		B								T	T		T	T		G	G	G	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	F	V	A	I	A	E	N	G	K	L	V	G	F	N	L	L	V	G	G	G	L	S	I	E	H	G	N	K	K	T	Y	A	R	T	A	S	E	F	G	Y	L	P	L	E	H	T	L	A	V	A	E	A	V	V	T	T	Q	R	D	W	G	N	R	T	D	R	K	N	A	K	T	K	Y	T	L	E	R	V
Query Conservation
Alig confidence														.																				.	.	.	.	.
Template Conservation														.																				.	.	.	.	.
Template Sequence		L	A	Y	M	P	A	T	K	N	G	K	F	.	G	F	N	L	L	V	G	G	F	F	S	I	K	R	C	E	E	A	I	.	.	.	.	.	P	L	D	A	W	V	S	A	E	D	V	V	P	V	C	K	A	M	L	E	A	F	R	D	L	G	F	R	G	N	R	Q	K	C	R	M	M	W	L	I	D	E	L
Template Known Secondary structure									S	S	S	S		.												S	S							.	.	.	.	.								G	G	G																			S	S	G	G	G		S
Template Predicted Secondary structure														.																				.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.						.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.										.
Query SS confidence																															.	.	.	.	.										.
Query Sequence		G	V	E	T	F	K	A	E	V	E	R	R	A	G	I	K	F	E	P	I	R	P	Y	E	F	T	G	R	G	.	.	.	.	.	D	R	I	G	W	V	K	G	I	.	D	D	N	W	H	L	T	L	F	I	E	N	G	R	I	L	D	Y	P	A	R	P	L	K	T	G	L	L	E	I	A	K	I	H	K	G
Query Conservation																															.	.	.	.	.										.
Alig confidence																															.	.	.	.	.										.																														.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		G	M	E	A	F	R	G	E	V	E	K	R	M	P	E	Q	V	L	E	R	A	S	S	E	E	L	V	Q	K	D	W	E	R	R	E	Y	L	G	V	H	P	Q	K	Q	Q	G	L	S	F	V	G	L	H	I	P	V	G	R	L	Q	A	D	E	M	E	E	L	A	R	I	A	D	V	.	.	.	Y	G	S	G
Template Known Secondary structure												T	T	S	T	T	S							S		B		S		S	S							B						S	S	T	T									G	G	G																	.	.	.		S	S	S
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		D	F	R	I	T	A	N	Q	N	L	I	I	A	G	V	P	E	S	E	K	A	K	I	E	K	I	A	K	E	S	G	.	L	M	N	A	V	T	P	Q	R	E	N	S	M	A	C	V	S	F	P	T	C	P	L	A	M	A	E	A	E	R	F	L	P	S	F	I	D	N	I	D	N	L	M	A	K	H	G	V
Query Conservation																																	.
Alig confidence																																	.																																													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		E	L	R	L	T	V	E	Q	N	I	I	I	P	N	V	E	N	S	K	I	D	S	L	L	N	E	P	L	L	K	E	R	Y	S	P	E	P	P	I	L	M	K	G	L	V	A	C	T	G	S	Q	F	C	G	Q	A	I	I	E	T	K	A	R	A	L	K	V	T	E	E	V	Q	R	L	V	S	.	.	.	.
Template Known Secondary structure							T	T	T									T	T	T					T	T	S					T	T	S		S	S			T	T	T	T							G	G	G	T		T	T		S	S																			.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.									.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.													.																								.
Query SS confidence																																	.	.	.	.	.	.	.	.													.																								.
Query Sequence		S	D	E	H	I	V	M	R	V	T	G	C	P	N	G	C	G	R	A	M	L	A	E	V	G	L	V	G	K	A	P	.	.	.	.	.	.	.	.	G	R	Y	N	L	H	L	G	G	N	R	I	.	G	T	R	I	P	R	M	Y	K	E	N	I	T	E	P	E	I	L	A	S	L	D	E	.	L	I	G	R
Query Conservation																																	.	.	.	.	.	.	.	.													.																								.
Alig confidence																																	.	.	.	.	.	.	.	.													.																								.
Template Conservation
Template Sequence		V	T	R	P	V	R	M	H	W	T	G	C	P	N	S	C	G	Q	V	Q	V	A	D	I	G	F	M	G	C	M	T	R	D	E	N	G	K	P	C	E	G	A	D	V	F	V	G	G	R	I	G	S	D	S	H	L	G	D	I	Y	K	K	A	V	P	C	K	D	L	V	P	V	V	A	E	I	L	I	N	Q
Template Known Secondary structure			S	S								S	S	T	T		T	T		G	G	G	S	S											T	T														B		S	T	T		B											T	T	T
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		538	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	K	E	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	A	V	P	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.