Job Description P17846 Confidence 100.00% Date Thu Jan 5 11:36:18 GMT 2012 Rank 1 Aligned Residues 524 % Identity 22% Template c1zj8B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.
Predicted Secondary structure																													.	.																							.																								.	.	.
Query SS confidence																													.	.																							.																								.	.	.
Query Sequence		S	E	K	H	P	G	P	L	V	V	E	G	K	L	T	D	A	E	R	M	K	H	E	S	N	Y	L	.	.	R	G	T	I	A	E	D	L	N	D	G	L	T	G	G	F	K	G	D	N	F	L	.	L	I	R	F	H	G	M	Y	Q	Q	D	D	R	D	I	R	A	E	R	A	E	Q	K	.	.	.	L	E
Query Conservation																													.	.																							.																								.	.	.
Alig confidence																													.	.																							.																								.	.	.
Template Conservation
Template Sequence		R	N	E	G	Q	W	A	L	G	H	R	E	P	L	N	A	N	E	E	L	K	K	A	G	N	P	L	D	V	R	E	R	I	E	N	I	Y	A	K	Q	G	F	D	S	I	D	K	T	D	L	R	G	R	F	R	W	W	G	L	Y	T	Q	R	E	Q	G	Y	D	G	T	W	T	G	D	D	N	I	D	K	L
Template Known Secondary structure							G	G	G	T			S			S						G	G	G	S		G	G	G								T						G	G	G	S						T	T	G	G	G	G	G	T							T	T			T	T	T		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	H	A	M	L	L	R	C	R	L	P	G	G	V	I	T	T	K	Q	W	Q	A	I	D	K	F	A	G	E	N	T	I	Y	G	S	I	R	L	T	N	R	Q	T	F	Q	F	H	G	I	L	K	K	N	V	K	P	V	H	Q	M	L	H	S	V	G	L	D	A	L	A	T	A	N	D	M	N	R	N	V
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		E	A	K	Y	F	M	M	R	V	R	C	D	G	G	A	L	S	A	A	A	L	R	T	L	G	Q	I	S	T	E	.	F	A	R	D	T	A	D	I	S	D	R	Q	N	V	Q	Y	H	W	I	E	V	E	N	V	P	E	I	W	R	R	L	D	D	V	G	L	Q	T	T	E	A	C	G	D	C	P	R	V	V
Template Known Secondary structure											B		G	G	G																	.		S	T	T						T	T	S									G	G	G										T	T	T		B		T	T	S	S	S	S	S
Template Predicted Secondary structure																																.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		L	C	T	S	N	P	Y	.	E	S	Q	L	H	A	E	A	Y	E	W	A	K	K	I	S	E	H	L	L	P	R	T	R	A	Y	A	E	I	W	L	D	Q	E	K	V	A	T	T	D	E	E	P	I	L	G	Q	T	Y	L	P	R	K	F	K	T	T	V	V	I	P	P	Q	N	D	I	D	L	H	A	N	D
Query Conservation									.
Alig confidence									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		L	G	S	P	L	A	G	E	S	L	D	E	V	L	D	P	T	W	A	I	E	E	I	V	R	R	Y	I	G	K	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	D	L	P	R	K	Y	K	T	A	I	S	G	L	Q	D	V	A	.	.	H	E	I	N	D
Template Known Secondary structure					T	T	T	T	T		S	S		S			T												T	T	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S			S	S								S	S	S		S		.	.	G	G	G	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	F	V	A	I	A	E	N	G	K	L	V	G	F	N	L	L	V	G	G	G	L	S	I	E	H	G	N	K	K	T	Y	A	R	T	A	S	E	F	G	Y	L	P	L	E	H	T	L	A	V	A	E	A	V	V	T	T	Q	R	D	W	G	N	R	T	D	R	K	N	A	K	T	K	Y	T	L	E	R	V
Query Conservation
Alig confidence																																	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		V	A	F	I	G	V	N	H	P	E	H	G	P	G	L	D	L	W	V	G	G	G	L	S	T	N	P	M	L	A	Q	.	.	.	.	.	.	R	V	G	A	W	V	P	L	G	E	V	P	E	V	W	A	A	V	T	S	V	F	R	D	Y	G	Y	R	R	L	R	A	K	A	R	L	K	F	L	I	K	D	W
Template Known Secondary structure										T	T	T											B		S	S	S		B				.	.	.	.	.	.								G	G	G																S			S	S	G	G	G		S
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		G	V	E	T	F	K	A	E	V	E	R	R	A	G	I	K	.	.	F	E	P	I	R	P	Y	E	F	T	G	R	G	D	R	I	G	W	V	K	G	I	D	D	N	W	H	L	T	L	F	I	E	N	G	R	I	L	D	Y	P	A	R	P	L	K	T	G	L	L	E	I	A	K	I	H	K	G	D	F	R	I
Query Conservation																		.	.
Alig confidence																		.	.																																																				.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		G	I	A	K	F	R	E	V	L	E	T	E	Y	L	K	R	P	L	I	D	G	P	A	P	E	P	V	K	H	P	I	D	H	V	G	V	Q	R	L	K	N	G	L	N	A	V	G	V	A	P	I	A	G	R	V	S	G	T	I	L	T	A	V	A	D	L	M	A	R	.	.	.	A	G	S	D	R	I	R	F
Template Known Secondary structure														T	T	S	S												S	S											T	T	S	S						B		B	T	T																	.	.	.	T	T
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		T	A	N	Q	N	L	I	I	A	G	V	P	E	S	E	K	A	K	I	E	K	I	A	K	E	S	G	L	M	N	A	V	T	P	Q	R	E	N	S	M	A	C	V	S	F	P	T	C	P	L	A	M	A	E	A	E	R	F	L	P	S	F	I	D	N	I	D	N	L	M	A	K	H	G	V	.	S	D	E	H
Query Conservation																																																																													.
Alig confidence																																																																													.
Template Conservation
Template Sequence		T	P	Y	Q	K	L	V	I	L	D	I	P	D	A	L	L	D	D	L	I	A	G	L	D	A	L	G	L	Q	S	R	P	S	H	W	R	R	N	L	M	A	C	S	G	I	E	F	C	K	L	S	F	A	E	T	R	V	R	A	Q	H	L	V	P	E	L	E	R	R	L	E	D	I	N	S	Q	L	D	V	P
Template Known Secondary structure			T	T	S																						T	T		B	S	S													B	T	T	T		T	T		S	S	B																T					T	T			S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.									.	.	.	.	500	.	.	.	.	.	.	.	.	.	510			.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.																.	.
Query SS confidence																										.	.	.	.	.	.	.	.																.	.
Query Sequence		I	V	M	R	V	T	G	C	P	N	G	C	G	R	A	M	L	A	E	V	G	L	V	G	.	.	.	.	.	.	.	.	K	A	P	G	R	Y	N	L	H	L	G	G	N	R	I	.	.	G	T	R	I	P	R	M	Y	K	E	N	I	T	E	P	E	I	L	A	S	L	D	E	L	I	G	R	W	A	K	E
Query Conservation																										.	.	.	.	.	.	.	.																.	.
Alig confidence																										.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		I	T	V	N	I	N	G	C	P	N	S	C	A	R	I	Q	I	A	D	I	G	F	K	G	Q	M	I	D	D	G	H	G	G	S	V	E	G	F	Q	V	H	L	G	G	H	L	G	L	D	A	G	F	G	R	K	L	R	Q	H	K	V	T	S	D	E	L	G	D	Y	I	D	R	V	V	R	N	F	V	K	H
Template Known Secondary structure								S	S	T	T		T	T		G	G	G	S	S										S	S	S	S											S		B	S	S	T	T		B						T	T					T	T	T															S
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	G	E	G	F	G	D	F	T	V	R	A	G	I	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	E	G	E	R	F	A	Q	W	V	I	R	A	E	E	D	D
Template Known Secondary structure				T	T										S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.