Job Description P0AC38 Confidence 6.30% Date Thu Jan 5 11:17:06 GMT 2012 Rank 74 Aligned Residues 91 % Identity 15% Template d2pxrc1 SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.50

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	Y	Q	G	G	A	G	T	S	V	N	M	N	T	N	E	V	L	A	N	I	G	L	E	L	M	G	H	Q	K	G	E	Y	Q	Y	L	N	P	N	D	H	V	N	K	C	Q	S	T	N	D	A	Y	P	T	G	F	R	I	A	V	Y	S	S	L	I	K	L	V	D	A	I	N	Q	L	R	E	G	F	E
Query Conservation
Alig confidence																																																							.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		P	I	V	Q	N	L	Q	G	Q	M	V	H	Q	A	I	S	P	R	T	L	N	A	W	V	K	V	V	E	E	K	A	F	S	P	E	V	I	P	M	F	S	A	L	S	E	G	A	T	P	Q	D	L	N	.	.	.	.	.	.	T	M	L	N	T	V	G	G	H	Q	A	A	M	Q	M	L	K	E	T	I	N
Template Known Secondary structure							T	T	S																							T	T	S	T	T								T		T	T								.	.	.	.	.	.					T	T	G	G	G	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	E	F	Q	D	I	L	K	M	G	R	T	Q	L	Q	D	A	V	P	M
Query Conservation
Alig confidence									.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		E	E	A	A	E	W	D	.	.	.	.	.	.	R	L	H	P	V	H	A	G	P	I
Template Known Secondary structure									.	.	.	.	.	.			S				S	S		S
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.							.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions