Job Description P0AC38 Confidence 31.77% Date Thu Jan 5 11:17:06 GMT 2012 Rank 32 Aligned Residues 93 % Identity 13% Template c2xgvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) Resolution 2.00 Å

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		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		V	Y	Q	G	G	A	G	T	S	V	N	M	N	T	N	E	V	L	A	N	I	G	L	E	L	M	G	H	.	Q	K	G	E	Y	Q	Y	L	N	P	N	D	H	V	N	K	C	Q	S	T	N	D	A	Y	P	T	G	F	R	I	A	V	Y	S	S	L	I	K	L	V	D	A	I	N	Q	L	R	E	G	F	E
Query Conservation																														.
Alig confidence																														.																									.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		P	V	V	N	R	G	Q	G	W	A	Y	E	P	M	S	T	R	T	V	A	A	W	I	R	Q	T	G	E	K	G	L	T	S	P	E	T	I	T	Y	W	G	L	I	S	Q	D	L	S	S	R	E	Q	V	.	.	.	.	.	.	Q	L	L	E	V	V	P	G	L	Q	A	D	K	D	M	L	G	A	Y	L	E
Template Known Secondary structure						S	S	S																							T	T	T	S											T	T	T								.	.	.	.	.	.								S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	E	F	Q	D	I	L	K	M	G	R	T	Q	L	Q	D	A	V	P	M	T	L	G	Q
Query Conservation
Alig confidence									.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		E	R	A	R	E	W	D	.	.	.	.	.	.	.	A	Q	P	Q	Q	P	L	P	Y	T	S	A	H
Template Known Secondary structure									.	.	.	.	.	.	.	T	S	S		S	S		S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.								.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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