Job Description P76556 Confidence 99.70% Date Thu Jan 5 12:24:35 GMT 2012 Rank 171 Aligned Residues 144 % Identity 15% Template c3r7wC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:gtp-binding protein gtr1; PDBTitle: crystal structure of gtr1p-gtr2p complex Resolution 2.77 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query Sequence		K	R	I	A	F	V	G	S	V	G	A	G	K	T	T	L	F	N	A	L	Q	G	N	Y	T	.	.	.	.	.	.	.	.	.	L	A	R	K	T	Q	A	V	E	F	N	D	K	G	D	I	D	T	P	G	E	Y	F	N	H	P	R	W	Y	H	A	L	.	.	.	.	.	I	T	T	L	Q	D	V	D	M
Query Conservation																											.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation
Template Sequence		S	K	L	L	L	X	G	R	S	G	S	G	K	S	S	X	R	S	I	I	F	S	N	Y	S	A	F	D	T	R	R	L	G	A	T	I	D	V	E	H	S	H	L	R	F	L	G	N	X	T	L	N	L	W	D	C	G	G	Q	D	V	F	X	E	N	Y	F	T	K	Q	K	D	H	I	F	Q	X	V	Q	V
Template Known Secondary structure										T	T	S											S				T	T	G	G	G	G						S									T	T	T											S									T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120											.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	Y	V	H	G	A	N	D	P	E	S	R	L	P	A	G	L	L	D	I	G	.	.	.	.	.	.	.	.	V	S	K	R	Q	I	A	V	I	S	K	T	D	M	P	D	A	D	V	A	A	T	R	K	L	L	L	E	T	G	F	.	.	.	.	.	.	.	.	.	.	E	E	P	M	F	E	L	N	S
Query Conservation																								.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	H	V	F	D	V	E	S	T	E	V	L	K	D	I	E	I	F	A	K	A	L	K	Q	L	R	K	Y	S	P	D	A	K	I	F	V	L	L	H	K	X	D	L	V	Q	L	D	K	R	E	E	L	F	Q	I	X	X	K	N	L	S	E	T	S	S	E	F	G	F	P	N	L	I	G	F	P	T	S	I
Template Known Secondary structure								T	T		T	T																				T	T										T	T	S	S																						T	T	T			S								T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	P	Q	S	V	Q	Q	L	V	D	Y	L	A	S	L	T
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		W	D	.	E	S	L	Y	K	A	W	S	Q	I	V	C	S	L
Template Known Secondary structure		T	S	.	T												T	T
Template Predicted Secondary structure				.
Template SS confidence
		167	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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