Job Description P76556 Confidence 99.77% Date Thu Jan 5 12:24:35 GMT 2012 Rank 100 Aligned Residues 145 % Identity 19% Template c3pqcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable gtp-binding protein engb; PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		R	I	A	F	V	G	S	V	G	A	G	K	T	T	L	F	N	A	L	Q	G	N	Y	T	.	.	.	.	.	.	.	.	.	L	A	R	K	T	Q	A	V	E	F	N	D	K	G	D	I	D	T	P	G	E	Y	F	N	.	.	.	.	.	.	.	.	.	H	P	R	W	Y	H	A	L	I	T	T	L	Q	D
Query Conservation																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	A	F	V	G	R	S	N	V	G	K	S	S	L	L	N	A	L	F	N	R	K	I	A	F	V	S	K	T	P	G	K	T	R	S	I	N	F	Y	L	V	N	S	K	Y	Y	F	V	D	L	P	G	Y	G	Y	A	K	V	S	K	K	E	R	M	L	W	K	R	L	V	E	D	Y	F	K	N	R	W	S
Template Known Secondary structure								B	T	T	S	S										T	S			S				S	S													T	T	T									B	S	S	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																			.	.	.	.
Query SS confidence																								.	.																			.	.	.	.
Query Sequence		V	D	M	L	I	Y	V	H	G	A	N	D	P	E	S	R	L	P	A	G	L	L	.	.	D	I	G	V	S	K	R	Q	I	A	V	I	S	K	T	D	M	P	.	.	.	.	D	A	D	V	A	A	T	R	K	L	L	L	E	T	G	F	E	E	P	M	F	E	L	N	S	H	D	P	Q	S	V	Q	Q	L
Query Conservation																								.	.																			.	.	.	.
Alig confidence																								.	.																			.	.	.	.
Template Conservation
Template Sequence		L	Q	M	V	F	L	L	V	D	G	R	I	P	P	Q	D	S	D	L	M	M	V	E	W	M	K	S	L	N	I	P	F	T	I	V	L	T	K	M	D	K	V	K	M	S	E	R	A	K	K	L	E	E	H	R	K	V	F	S	K	Y	G	E	Y	T	I	I	P	T	S	S	V	T	G	E	G	I	S	E	L
Template Known Secondary structure											T	T	S																T	T										G	G	G	S		G	G	G														S	S			S							T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		139	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	Y	L	A	S	L	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	L	I	S	T	L	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions