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Job DescriptionP76556
Confidence99.76%DateThu Jan 5 12:24:35 GMT 2012
Rank121Aligned Residues144
% Identity16%Templatec3bbpA_
PDB info PDB header:protein transport/splicingChain: A: PDB Molecule:ras-related protein rab-6a; PDBTitle: rab6-gtp:gcc185 rab binding domain complex
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30...... ...40.........50.........60.........70...
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Query Sequence  RIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEF. . . . . . . . . NDKGDIDTPGEYFNHPRWYHALITTLQDVDMLIYVHG
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Template Sequence  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYD
Template Known Secondary structure  STTSSTS



S




STT

SSGGGTTTT
S
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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   74.....80......... 90.........100.... .....110.........120.........130.........140......
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Query Sequence  ANDPESRLPAGLLDIG. . . . . . VSKRQIAVISKTDMP. DADVAATRKLLLETGFEEPMFELNSHDPQSVQQLVDYLASLT
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Template Sequence  ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL
Template Known Secondary structure  TT
TTTSS
GGG
TT

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TT

BTTTTBTTT
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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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