Job Description P76556 Confidence 96.83% Date Thu Jan 5 12:24:35 GMT 2012 Rank 384 Aligned Residues 133 % Identity 11% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	I	A	F	V	G	S	V	G	A	G	K	T	T	L	F	N	A	L	Q	G	N	Y	T	L	A	R	K	T	Q	A	V	E	F	N	D	K	G	D	I	D	T	P	G	E	Y	F	N	H	P	R	W	Y	H	A	L	I	T	T	L	Q	D	V	D	M	L	I	Y	V	H	G	A	N	D	P	E	S	R	L
Query Conservation
Alig confidence																								.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	.	.	.	.	.	E	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V
Template Known Secondary structure		S						S	S	T	T	S												.	.	.	.	.		T	T								T	T	T	T		S	S	T	T																	T		S							T		T	T	T				T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.						.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
		82	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		P	A	G	L	L	D	I	G	.	.	.	.	.	.	V	S	K	R	Q	I	A	V	I	S	K	T	D	M	P	D	A	D	V	A	A	T	R	K	L	L	L	E	T	G	F	E	E	P	M	F	E	L	N	S	H	D	P	Q	S	V	Q	Q	L	V	D	Y	L	A	S
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		R	V	V	N	Q	L	L	T	E	M	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P	.	.	.	.	.	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	A	D	R	L	A	I	L	K	T	I	T	K
Template Known Secondary structure		T											T			S	T	T									S		G	G	G	S			.	.	.	.	.				S	T	T	S	S								S														T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.						.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions