Job Description P76556 Confidence 99.75% Date Thu Jan 5 12:24:35 GMT 2012 Rank 138 Aligned Residues 143 % Identity 13% Template c2q3fB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp Resolution 2.10 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.
Predicted Secondary structure				.																									.	.	.	.	.	.	.	.	.																																	.	.	.
Query SS confidence				.																									.	.	.	.	.	.	.	.	.																																	.	.	.
Query Sequence		M	K	.	R	I	A	F	V	G	S	V	G	A	G	K	T	T	L	F	N	A	L	Q	G	N	Y	T	.	.	.	.	.	.	.	.	.	L	A	R	K	T	Q	A	V	E	F	N	D	K	G	D	I	D	T	P	G	E	Y	F	N	H	P	R	W	Y	H	A	L	.	.	.	I	T	T	L	Q	D	V	D	M
Query Conservation				.																									.	.	.	.	.	.	.	.	.																																	.	.	.
Alig confidence				.																									.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation
Template Sequence		V	K	P	R	I	L	L	X	G	L	R	R	S	G	K	S	S	I	Q	K	V	V	F	H	K	X	S	P	N	E	T	L	F	L	E	S	T	N	K	I	C	R	E	D	V	S	N	S	S	F	V	N	F	Q	I	W	D	F	P	G	Q	I	D	F	F	D	P	T	F	D	Y	E	X	I	F	R	G	T	G	A
Template Known Secondary structure											S	T	T	S	S										S				G	G	G	G	G	G						S									S	S											S				T	T		T	T									T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		68	.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.													.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	Y	V	H	G	A	N	D	P	E	S	.	.	.	.	.	.	.	R	L	P	A	G	L	L	D	I	G	V	S	K	R	Q	I	A	V	I	S	K	T	D	M	P	D	A	D	.	.	.	.	.	.	.	.	.	.	.	.	V	A	A	T	R	K	L	L	L	E	T	G	F	E	E	P	M	F	E	L	N
Query Conservation														.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	F	V	I	D	S	Q	D	D	Y	X	E	A	L	A	R	L	H	L	T	V	T	R	A	Y	K	V	N	T	D	I	N	F	E	V	F	I	H	K	V	D	G	L	S	D	D	H	K	I	E	T	Q	R	D	I	H	Q	R	A	N	D	D	L	A	D	A	G	L	E	K	I	H	L	S	F	Y	L	T	S
Template Known Secondary structure								T	T	S																					T	T										T	T	S	S																							T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	D	P	Q	S	V	Q	Q	L	V	D	Y	L	A	S
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		I	Y	D	H	.	S	I	F	E	A	F	S	K	V	V	Q
Template Known Secondary structure		T	T	S	S	.
Template Predicted Secondary structure						.
Template SS confidence
		202	.	.	.		.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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