Job Description P76556 Confidence 99.72% Date Thu Jan 5 12:24:35 GMT 2012 Rank 162 Aligned Residues 143 % Identity 15% Template c2hupB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:ras-related protein rab-43; PDBTitle: crystal structure of human rab43 in complex with gdp Resolution 2.05 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		R	I	A	F	V	G	S	V	G	A	G	K	T	T	L	F	N	A	L	Q	G	N	Y	T	L	A	R	K	T	Q	A	V	E	F	N	D	K	G	D	I	D	T	P	G	E	Y	F	N	H	P	R	W	Y	H	A	L	I	T	T	L	Q	D	V	D	M	L	I	Y	V	H	G	A	N	D	P	E	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																					.	.	.	.																							.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		K	L	V	L	V	G	D	A	S	V	G	K	T	C	V	V	Q	R	F	K	T	G	A	F	D	F	T	M	K	T	L	E	I	R	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	I	.	.	.	.	T	Q	S	Y	Y	R	S	A	N	G	A	I	L	A	Y	D	I	T	K	R	S	S	F	L	S
Template Known Secondary structure									T	T	S	S											S																					T	T		G	G	G				.	.	.	.						T	T		S								T	T
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																												.	.
Query SS confidence		.	.	.																												.	.
Query Sequence		.	.	.	R	L	P	A	G	L	L	D	I	G	V	S	K	R	Q	I	A	V	I	S	K	T	D	M	P	D	A	.	.	D	V	A	A	T	R	K	L	L	L	E	T	G	F	E	E	P	M	F	E	L	N	S	H	D	P	Q	S	V	Q	Q	L	V	D	Y	L	A	S	L	T	K	Q	E
Query Conservation		.	.	.																												.	.
Alig confidence		.	.	.																												.	.
Template Conservation
Template Sequence		V	P	H	W	I	E	D	V	R	K	Y	A	G	S	N	I	V	Q	L	L	I	G	N	K	S	D	L	S	E	L	R	E	V	S	L	A	E	A	Q	S	L	A	E	H	Y	D	I	L	C	A	I	E	T	S	A	K	D	S	S	N	V	E	E	A	F	L	R	V	A	T	E	L	I	M	R
Template Known Secondary structure													S		S											G	G	G	G	G	G			S												T	T		S							T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions