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Job DescriptionP76556
Confidence98.86%DateThu Jan 5 12:24:35 GMT 2012
Rank257Aligned Residues147
% Identity19%Templatec1tndA_
PDB info PDB header:binding protein(gtp)Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.. ....
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Query Sequence  RIAFVGSVGAGKTTLFNALQ. . . GNYT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTI
Template Known Secondary structure 
STTSSS



TT


SSTTTTTS
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   31........40.........50.........60.........70.........80.........90.........100.........110
 
   27..30.........40.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LARKTQAVEFNDKGD
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Template Sequence  EEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDL
Template Known Secondary structure 
TT


STTGGGS


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STT
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   111........120.........130.........140.........150.........160.........170.........180.........190
 
   42.......50.........60.........70......... 80.........90.........100....
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Query Sequence  IDTPGEYFNHPRWYHALITTLQDVDMLIYVHGANDPES. . . . . . . . . . . . . . . . . RLPAGLLDIGVSKRQIAVISKTDMP
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Template Sequence  NFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVF
Template Known Secondary structure 

SGGGGGG
TT
SGGGGG
B
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TTSBT
SGGGS

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   191........200.........210.........220.........230.........240.........250.........260.........270
 
   105 ....110.........120 .........130.........140.........
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Query Sequence  D. . . . . . . . . . . . . . . . . . . . . ADVAATRKLLLETGF. . . . . . EEPMFELNSHDPQSVQQLVDYLASLTKQE
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Template Sequence  SEKIKKAHLSICFPDYNGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKE
Template Known Secondary structure  TTS
GGGT
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   271........280.........290.........300.........310.........320.........330.........340..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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