Job Description P76556 Confidence 99.37% Date Thu Jan 5 12:24:35 GMT 2012 Rank 239 Aligned Residues 121 % Identity 26% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.														.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	A	F	V	G	S	V	G	A	G	K	T	T	L	F	N	A	L	Q	G	N	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	K	T	Q	A	V	E	F	N	D	K	G	D	I	D	T	P	G	E	Y	F	N	H	P	R	W	Y	H	A	L	I	T	T	L	Q	D	V	D	M	L	I
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	D	K	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H	R	R	F	S	L	L	D	A	P	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	A	D	I	G	V
Template Known Secondary structure									T	T	S	S												T	T	S	S																				S	S											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.																.	.	300	.	.	.	.
		70	.	.	.	.	.	.	.											.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		Y	V	H	G	A	N	D	P	.	.	.	.	.	.	.	.	.	.	E	S	R	L	P	A	G	L	L	D	I	G	V	S	K	R	Q	I	A	V	I	S	K	T	D	M	P	.	.	.	.	.	.	.	.	.	D	A	D	V	A	A	T	R	K	L	L	L	E	T	G	F	.	.	.	.	.	E	E	P	M	F
Query Conservation										.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R	R	V	A	G	Y	N	S	K	T	D	V	K	Y	M
Template Known Secondary structure							S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S																								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	N	S	H	D	P	Q	S	V	Q	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	S	A	Y	T	G	Q	N	V	K	D	R
Template Known Secondary structure				B	T	T	T	T	B	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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