Job Description P32137 Confidence 99.88% Date Thu Jan 5 11:49:23 GMT 2012 Rank 4 Aligned Residues 391 % Identity 12% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	K	L	S	Y	G	I	G	D	L	A	S	N	I	L	L	D	I	G	T	L	Y	L	L	K	F	Y	T	D	V	L	G	L	P	G	T	Y	G	G	I	I	F	L	I	S	K	F	F	T	A	F	T	D	M	G	T	G	I	M	L	D	S	R	R	K	I	G	P	K	G	K	F	R	P	F	I	L	Y	A
Query Conservation
Alig confidence																												.																																							.	.	.	.	.	.	.
Template Conservation																												.																																							.	.	.	.	.	.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	.	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	.	.	.	.	.	.	.	Y	K	A	G	I	I	T	G
Template Known Secondary structure			T	T	T																							.							T	T			T	T													T	T											S		.	.	.	.	.	.	.
Template Predicted Secondary structure																												.																																							.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	P	V	T	L	L	A	I	A	N	F	V	G	T	P	F	D	V	T	G	K	T	V	M	A	T	I	L	F	M	L	Y	G	L	F	F	S	M	M	N	C	S	Y	G	A	M	V	P	A	I	T	K	N	P	N	E	R	A	S	L	A	A	W	R	Q	G	G	A	T	L	G	L	L	L	C	T	V	G	F
Query Conservation
Alig confidence																					.	.	.																																.
Template Conservation																					.	.	.																																.
Template Sequence		L	F	L	Y	A	L	G	A	A	L	F	W	P	A	A	E	I	M	N	.	.	.	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	.	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G
Template Known Secondary structure											T							T	T		.	.	.																													S	S		.	G	G	G
Template Predicted Secondary structure																					.	.	.																																.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	V	M	N	L	I	E	G	N	Q	Q	L	G	Y	I	F	A	A	T	L	F	S	L	F	G	L	L	F	M	W	I	C	Y	S	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	R	Y	V	E	T	Q	P	A	N	P	A	Q	K	P	G	L	L	Q	S	F	R	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R
Template Known Secondary structure				T	T	S	S	S	S											S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	N	R	P	L	F	I	L	C	I	A	N	L	C	T	L	G	A	F	N	V	K	L	A	I	Q	V	Y	Y	T	Q	Y	V	L	N	D	P	I	L	L	S	Y	M	G	F	F	S	M	G	C	I	F	I	G	V	F	L	M	P	A	S	V	R	R	F	G	K	K	K	V	Y	I	G	G	L	L	I	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L
Template Known Secondary structure																																					S	T	T																															S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	D	L	L	N	Y	F	F	G	G	G	S	V	S	F	V	A	F	S	C	L	A	F	F	G	S	A	F	V	N	S	L	N	W	A	L	V	S	D	T	V	E	Y	G	E	W	R	T	G	V	R	S	E	G	T	V	Y	T	G	F	T	F	F	R	K	V	S	Q	A	L	A	G	F	F	P	G	W	M
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence		I	A	M	A	L	C	L	I	S	A	F	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	.	.	.	.	.	.	.	.	.	Q	D	T	K	Y	G	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V
Template Known Secondary structure													S																	T	T											S	S		G	.	.	.	.	.	.	.	.	.	G	G											G	G	G
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.										.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	Q	I	G	Y	V	P	N	V	A	Q	A	D	H	T	I	E	G	L	R	Q	L	I	F	I	Y	P	S	A	L	A	V	V	T	I	V	A	M	G	C	F	Y	S	L	N
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	A	A	G	N	I	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure						T	S	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G															T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.																.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.