Job Description P32137 Confidence 5.70% Date Thu Jan 5 11:49:23 GMT 2012 Rank 26 Aligned Residues 433 % Identity 10% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.										.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.
Query Sequence		E	D	P	A	T	L	R	L	P	F	K	E	K	L	S	Y	G	I	G	D	L	A	S	N	I	L	L	D	I	G	T	L	Y	L	L	K	F	Y	T	D	V	L	G	L	P	G	T	Y	G	G	I	I	F	L	I	S	K	F	F	T	A	F	T	D	M	G	T	G	I	M	.	.	.	.	.	.	.	.	.	L
Query Conservation																																																																								.	.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	V	H	R	Y	K	K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A
Template Known Secondary structure		T	T																																								T	T	T	T	T	T																								G	G	G		T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	R	R	K	I	G	P	K	G	K	F	R	P	F	I	L	Y	A	S	F	P	V	T	L	L	A	I	A	N	F	V	G	T	P	F	D	V	T	G	K	T	V	M	A	T	I	L	F	M	L	Y	G	L	F	F	S	M	M	N	C	S	Y	G	A	M	V	P	A	I	T	K	N	P	N	E	R	A	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P
Template Known Secondary structure		S	S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	W	R	Q	G	G	A	T	L	G	L	L	L	C	T	V	G	F	V	P	V	M	N	L	I	E	G	N	Q	Q	L	G	Y	I	F	A	A	T	L	F	S	L	F	G	L	L	F	M	W	I	C	Y	S	G	V	K	E	R	Y	V	E	T	Q	P	A	N	P	A	Q	K	P	G	L	L	Q	S	F	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F
Template Known Secondary structure																						T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	N	R	P	L	F	I	L	C	I	A	N	L	C	T	L	G	A	F	N	V	K	L	A	I	Q	V	Y	Y	T	Q	Y	V	L	N	D	P	I	L	L	S	Y	M	G	F	F	S	M	G	C	I	F	I	G	V	F	L	M	P	A	S	V	R	R	F	G	K	K	K	V	Y	I	G	G	L	L	I	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L
Template Known Secondary structure																									T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		318	.	320	.	.	.	.																	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	G	D	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	F	G	G	G	S	V	S	F	V	A	F	S	C	L	A	F	F	G	S	A	F	V	N	S	L	N	W	A	L	V	S	D	T	V	E	Y	G	E	W	R	T	G	V	R	S	E	G	T	V	Y	T	G	F	T	F
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.
Template Sequence		M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	.	.	.	.	.	.	.	K	D	M	T	A	I	F	H	R	T	F
Template Known Secondary structure																									T	S	S		S	S	T	T																													G	G	G	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.								.	.	.	.	.	390	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	K	V	S	Q	A	L	A	G	F	F	P	G	W	M	L	T	Q	I	G	Y	V	P	N	V	A	Q	A	D	H	T	I	E	G	L	R	Q	L	I	F	I	Y	P	S	A	L	A	V	V	T	I	V	A	M	G	C	F	Y	S	L	N	E	K	M	Y	V	R	I	V	E	E	I	E	A	R	K	R	T	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Sequence		I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	.	.	.	.	.	.	.	.	.	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	.	.	.	.	.	.	V	Q	L	H	L	A	A
Template Known Secondary structure																				S	S	S			S	.	.	.	.	.	.	.	.	.																					T	G	G	G	S	T	T	T			S	S		T	.	.	.	.	.	.	T	T	T	T	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.										420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.							.	.	.	.	.	.	460