Job Description P32137 Confidence 99.89% Date Thu Jan 5 11:49:23 GMT 2012 Rank 3 Aligned Residues 372 % Identity 11% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	S	Y	G	I	G	D	L	A	S	N	I	L	L	D	I	G	T	L	Y	L	L	K	F	Y	T	D	V	L	G	L	P	G	T	Y	G	G	I	I	F	L	I	S	K	F	F	T	A	F	T	D	M	G	T	G	I	M	L	D	S	R	R	K	I	G	P	K	G	K	F	R	P	F	I	L	Y	A	S	F
Query Conservation
Alig confidence																										.																																							.	.	.	.	.	.	.
Template Conservation																										.																																							.	.	.	.	.	.	.
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	.	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	.	.	.	.	.	.	.	R	R	P	V	I	L	V	G	M	S
Template Known Secondary structure																										.			T	T	S	S	S	T	T																			T	T						T	T	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																										.																																							.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.								.	.	.	.	.	.	.	.	80	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	T	L	L	A	I	A	N	F	V	G	T	P	F	D	V	T	G	K	T	V	M	A	T	I	L	F	M	L	Y	G	L	F	F	S	M	M	N	C	S	Y	G	A	M	V	P	A	I	T	K	N	P	N	E	R	A	S	L	A	A	W	R	Q	G	G	A	T	L	G	L	L	L	C	T	V	G	F	V	P
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L
Template Known Secondary structure																			.	.	.	.	.	.																													T	S	S			S																							S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	N	L	I	E	G	N	Q	Q	L	G	Y	I	F	A	A	T	L	F	S	L	F	G	L	L	F	M	W	I	C	Y	S	G	V	K	E	R	Y	V	E	T	Q	P	A	N	P	A	Q	K	P	G	L	L	Q	S	F	R	A	I	A	G	N	R	P	L	F	I	L	C	I	A	N	L	C	T	L	G	A	F
Query Conservation
Alig confidence			.	.	.	.	.	.	.																																															.	.	.	.
Template Conservation			.	.	.	.	.	.	.																																															.	.	.	.
Template Sequence		D	.	.	.	.	.	.	.	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	.	.	.	.	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A
Template Known Secondary structure		S	.	.	.	.	.	.	.																										S	S				S	T	T	T						T	T	T		S	T		.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.																																															.	.	.	.
Template SS confidence
		156								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		N	V	K	L	A	I	Q	V	Y	Y	T	Q	Y	V	L	N	D	P	I	L	L	S	Y	M	G	F	F	S	M	G	C	I	F	I	G	V	F	L	M	P	A	S	V	R	R	F	G	K	K	K	V	Y	I	G	G	L	L	I	W	V	L	G	D	L	L	N	Y	F	F	.	.	G	G	G	S	V	S	F	V	A
Query Conservation																																																																							.	.
Alig confidence																																																																							.	.
Template Conservation
Template Sequence		A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V
Template Known Secondary structure								S		S	S																	T														T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	C	L	A	F	F	G	S	A	F	V	N	S	L	N	W	A	L	V	S	D	T	V	E	Y	G	E	W	R	T	G	V	R	S	E	G	T	V	Y	T	G	F	T	F	F	R	K	V	S	Q	A	L	A	G	F	F	P	G	W	M	L	T	Q	I	G	Y	V	P	N	V	A	Q	A	D	H	T	I	E	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	.	.	.	.	.	.	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	S	S	T	T						T				.	.	.	.	.	.	.	.																						S	T	T		T								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.									330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	L	I	F	I	Y	P	S	A	L	A	V	V	T	I	V	A	M	G	C	F	Y	S	L
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L	C	W	L	P	L
Template Known Secondary structure		.	.	.	.	.																T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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