Return to main results Retrieve Phyre Job Id

Job DescriptionP77212
Confidence98.76%DateThu Jan 5 12:26:22 GMT 2012
Rank276Aligned Residues205
% Identity18%Templated1kifa1
SCOP infoNucleotide-binding domain Nucleotide-binding domain D-aminoacid oxidase, N-terminal domain
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20....... ..30.........40.........50.........60.........70....
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Query Sequence  MNKYQAVIIGFGKAGKTLAVTLAKAGW. . . . . . RVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEV
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Template Sequence  MR. . . VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLW. . . . . . QPYTSEPSNPQEANWNQQT
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   1. .......10.........20.........30.........40.........50.. .......60.........70.
 
   75....80.........90.........100.........110.........120.........130.........140.........150....
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Query Sequence  VNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNL
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Template Sequence  FNYLLSHIGSPNAANMGLTPVSGYNLFREAV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTSTTTTTTTSS

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   72.......80.........90.........100..
 
   155....160.........170.........180.........190.........200.........210.........220.........230....
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Query Sequence  KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQV
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Template Sequence  . . . . . PDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFL. . . . . . . . . . . RKVES
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   103......110.........120.........130.........140.........150.........160. .....
 
   235....240.........250.. .......260.........270.........
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Query Sequence  HSEHAQLAVDALLIASGR. . . . . QPATASLHPENAGIAVNERGAIVVDKR
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Template Sequence  FEEVARGGADVIINCTGVWAGVLQPDPLQVRLEREQLRFGSSNTEVIHNY
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   167..170.........180.........190.........200.........210......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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