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Job DescriptionP77212
Confidence99.78%DateThu Jan 5 12:26:22 GMT 2012
Rank138Aligned Residues271
% Identity14%Templated1jnra2
SCOP infoFAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.... .....30.........40.........50.........60.........70.......
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Query Sequence  KYQAVIIGFGKAGKTLAVTLAK. . . . AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNF.
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Template Sequence  ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV. AQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDM
Template Known Secondary structure 
S

STTTT


SS
TTT
STT.TT
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SSSSBS



T
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   22.......30.........40.........50.........60...... ...70.........80.........90.........100
 
   78.80.........90.........100.........110.........120.........130.........140
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Query Sequence  . . . . . . . . . . . . . . LRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGIT. . .
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Template Sequence  MGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELL
Template Known Secondary structure  TT


TT

B
B
TTS
B
BSSSS
TT
GGG
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   141........150.........160.........170.........180.........190.........200.........210.......
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Query Sequence  . . . TTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDII
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Template Sequence  KDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKA. . . . . . . . . .
Template Known Secondary structure 
TT
TTBSSSS

S



B
SSS

S

SGGGG

SS
TT
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   181........190.........200.........210.........220.........230.........240.........250
 
   218.220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  LNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGG.
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . GAMLTQAGFWVC. . . . . GPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGAN
Template Known Secondary structure  ..........................T






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TT
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   251........260.. .......270.........280.........290.........
 
   297..300.........310.....
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Query Sequence  . LQFTYISLDDYRIVRDELL
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Template Sequence  PHKFSSGSFTEGRIAAKAAV
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   445....450.........460....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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