Job Description P77212 Confidence 100.00% Date Thu Jan 5 12:26:22 GMT 2012 Rank 33 Aligned Residues 411 % Identity 21% Template c3ntaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase Resolution 2.01 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		M	N	K	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	.	.	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L
Query Conservation																												.	.
Alig confidence					.	.																						.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	K	K	.	.	I	L	I	I	G	G	V	A	G	G	A	S	A	A	A	R	A	R	R	L	S	E	T	A	E	I	I	X	F	E	R	G	E	Y	V	S	F	A	N	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Y	H	I	S	G	E	I	A	Q	R	S	A	L
Template Known Secondary structure					.	.							S	T	T													S	S								S	S	S		S	S	B		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	S	S	S			G	G	G	G
Template Predicted Secondary structure					.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		R	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	.	.	.	.	.	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T	P	G	V	Y	D	S	T	G	L	L	N
Query Conservation																																			.	.	.	.	.
Alig confidence																																			.	.	.	.	.
Template Conservation
Template Sequence		V	L	Q	T	P	E	S	F	K	A	R	F	N	V	E	V	R	V	K	H	E	V	V	A	I	D	R	A	A	K	L	V	T	V	R	R	L	L	D	G	S	E	Y	Q	E	S	Y	D	T	L	L	L	S	P	G	A	A	P	I	V	P	P	I	P	G	V	D	N	P	L	T	H	S	L	R	N	I	P	D	X
Template Known Secondary structure		B																	T	T								T	T	T	T							T	T	T									S																T	T			S	T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		154	.	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		L	K	E	.	.	.	.	.	.	.	L	P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D	I	I	L	N	A	H	V	E	R	I	S
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	I	L	Q	T	I	Q	X	N	N	V	E	H	A	T	V	V	G	G	G	F	I	G	L	E	X	X	E	S	L	H	H	L	G	I	K	T	T	L	L	E	L	A	D	Q	V	X	T	P	V	D	R	E	X	A	G	F	A	H	Q	A	I	R	D	Q	G	V	D	L	R	L	G	T	A	L	S	E	V	S
Template Known Secondary structure											T	T		S								S													T	T								S	S	S	S	S		S	S	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		227	.	.	230	.																					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	H	E	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																																																												.	.
Template Sequence		Y	Q	V	Q	T	H	V	A	S	D	A	A	G	E	D	T	A	H	Q	H	I	K	G	H	L	S	L	T	L	S	N	G	E	L	L	E	T	D	L	L	I	X	A	I	G	V	R	P	E	T	Q	L	A	R	D	A	G	L	.	.	A	I	G	E	L	G	G	I	K	V	N	A	X	X	Q	T	S	D	P	A
Template Known Secondary structure											T	T	T	T				T	T			T	T								T	T	S						S						S												T	T		.	.		B		T	T	S	S	B				T	T		B		S	S	T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.											.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		I	W	A	M	G	D	V	T	G	G	L	.	.	.	.	.	.	.	.	.	.	Q	F	T	Y	I	S	L	D	D	Y	R	I	V	R	D	E	L	L	G	E	G	K	R	S	T	D	D	R	K	N	V	P	Y	S	V	F	M	T	P	P	L	S	R	V	G	M	T	E	E	Q	A	R	E	S	G	A	D	I	Q
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																																	.
Template Sequence		I	Y	A	V	G	D	A	V	E	E	Q	D	F	V	T	G	Q	A	C	L	V	P	L	A	G	P	A	N	R	Q	G	R	X	A	A	D	N	X	F	G	R	E	E	R	Y	Q	G	.	T	Q	G	T	A	I	C	K	V	F	D	L	A	V	G	A	T	G	K	N	E	K	Q	L	K	Q	A	G	I	A	F	E
Template Known Secondary structure						S	T	T	B				B	T	T	T																								T	T								.	B									T	T																T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.
Predicted Secondary structure																																															.																										.
Query SS confidence																																															.																										.
Query Sequence		V	V	T	L	P	V	A	A	I	P	R	A	R	V	M	N	D	T	R	G	V	L	K	A	I	V	D	N	K	T	Q	R	M	L	G	A	S	L	L	C	V	D	S	H	E	.	M	I	N	I	V	K	M	V	M	D	A	G	L	P	Y	S	I	L	R	D	Q	I	F	T	H	.	P	S	M	S	E	S	L	N
Query Conservation																																															.																										.
Alig confidence												.																																			.																										.
Template Conservation												.
Template Sequence		K	V	Y	V	H	T	A	S	H	A	.	S	Y	Y	P	G	A	E	V	V	S	F	K	L	L	F	D	P	V	K	G	T	I	F	G	A	Q	A	V	G	K	D	G	I	D	K	R	I	D	V	X	A	V	A	Q	R	A	G	X	T	V	E	Q	L	Q	H	L	E	L	S	Y	A	P	P	Y	G	S	A	K	D
Template Known Secondary structure									S	S		.	T	T	S	T	T												T	T	T											S	S	S														T	T							T	T							T	T	T			S	S
Template Predicted Secondary structure												.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		435	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		456	.