Job Description P77212 Confidence 99.44% Date Thu Jan 5 12:26:22 GMT 2012 Rank 205 Aligned Residues 246 % Identity 15% Template c3nksA_ PDB info PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																																																						.	.	.
Query SS confidence																								.	.																																																						.	.	.
Query Sequence		Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	.	.	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L	R	.	.	.
Query Conservation																								.	.																																																						.	.	.
Alig confidence																								.	.																									.																													.	.	.
Template Conservation																																																		.
Template Sequence		T	V	V	V	L	G	G	G	I	S	G	L	A	A	S	Y	H	L	S	R	A	P	C	P	P	K	V	V	L	V	E	S	S	E	R	L	G	G	W	I	R	S	V	R	G	P	N	G	.	A	I	F	E	L	G	P	R	G	I	R	P	A	G	A	L	G	A	R	T	L	L	L	V	S	E	L	G	L	D	S
Template Known Secondary structure									B												T	S	S	S									S	S	S	S	S	B	T	T							T	T	S	.					S	S				B																	T	T		G	G
Template Predicted Secondary structure																																																		.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T	P	G	V	Y	D	S	T	G	L	L	N	L	K	E	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		E	V	L	P	V	R	G	D	H	P	A	A	Q	N	R	F	L	Y	V	G	G	A	L	H	A	L	P	T	G	L	R	G	P	S	P	P	F	S	K	P	L	F	W	A	G	L	R	E	L	T	K	P	R	G	K	E	P	D	E	T	V	H	S	F	A	Q	R	R	L	G	P	E	V	A	S	L	A	M	D	S
Template Known Secondary structure		G						T	T	S											T	T								S	S					T	T	S		S		S	S					T	T	T	T	S					S	S			B																	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	C	R	G	V	F	A	G	N	S	R	E	L	S	I	R	S	C	F	P	S	L	F	Q	A	E	Q	T	H	R	S	I	L	L	G	L	L	L	G	Q	P	D	S	A	L	I	R	Q	A	L	A	E	R	W	S	Q	W	S	L	R	G	G	L	E	M	L	P	Q	A	L	E	T	H	L	T	S	R	G	V	S
Template Known Secondary structure								S	S		T	T	T	B	B																S																						T	T		S					T	T		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		I	I	L	N	A	H	V	E	R	I	S	H	H	E	N	Q	V	Q	.	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		V	L	R	G	Q	P	V	C	G	L	S	L	Q	A	E	G	R	W	K	V	S	L	R	D	S	S	L	E	A	D	H	V	I	S	A	I	P
Template Known Secondary structure					S										G	G	G							S	S						S						S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions