Return to main results Retrieve Phyre Job Id

Job DescriptionP77212
Confidence99.56%DateThu Jan 5 12:26:22 GMT 2012
Rank178Aligned Residues199
% Identity12%Templatec3dmeB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN
Query Conservation   








 


 

  
   
  
 


     

                                          
Alig confidence 










































..........


























Template Conservation    








 


 
  

  
  
 


       


  ..........  
 
              
       
Template Sequence  DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSR. . . . . . . . . . NSEVIHAGIYYPADSLKARLCVRGKHL
Template Known Secondary structure 


STT


SSSSTT
SGGGS..........S





SS
TT
Template Predicted Secondary structure 
















..........









Template SS confidence 















































































   4.....10.........20.........30.........40...... ...50.........60.........70...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG
Query Conservation                                                                                  
Alig confidence 






















........................................
















Template Conservation     
                   ........................................                 
Template Sequence  LYEYCAARGVPHQRLGKLIVATS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DAEASQLDSIARRAGAN
Template Known Secondary structure  T





S........................................TTT
Template Predicted Secondary structure 









........................................
Template SS confidence 















































































   74.....80.........90...... ...100.........110...
 
   163......170.........180.........190.........200.........210.........220.........230...... ..
Predicted Secondary structure 

























....
Query SS confidence 









































































. . . .

Query Sequence  ILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHS. . . . EH
Query Conservation                                            
       

 
     
  
        
  ....  
Alig confidence 









































































....

Template Conservation                   
                        
       
        
  
         
       
Template Sequence  GVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEP
Template Known Secondary structure  T




TT


STT

TT

S


TTSS
SSS
Template Predicted Secondary structure 






























Template SS confidence 















































































   114.....120.........130.........140.........150.........160.........170.........180.........190...
 
   239240.........250.
Predicted Secondary structure 





Query SS confidence 












Query Sequence  AQLAVDALLIASG
Query Conservation    
  
 

 
 
Alig confidence 












Template Conservation         

 
 
Template Sequence  MTLSCRVLINAAG
Template Known Secondary structure 

G
Template Predicted Secondary structure 








Template SS confidence 












   194.....200......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions