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Job DescriptionP77212
Confidence100.00%DateThu Jan 5 12:26:22 GMT 2012
Rank36Aligned Residues415
% Identity21%Templatec3cgdB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i; PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20...... ...30.........40.........50.........60.........70.........80.
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Query Sequence  YQAVIIGFGKAGKTLAVTLAKAG. . WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK
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Template Sequence  MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY. SYAQCGLPYVISGAIASTEKLI. . . . . . . . . . . . . . . . . . AR
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S
TT

SSS

.SB
GGGTTSSS
GGGGB..................SS
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   1........10.........20.........30....... ..40.........50......... 60.
 
   82.......90.........100.........110...... ...120.........130.........140.........150......
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Query Sequence  NFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNL. . . . . EIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKE
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Template Sequence  NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERI
Template Known Secondary structure 
TT

SSTTTTTTT


S







BTTTSBT

SS
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   62.......70.........80.........90.........100.........110.........120.........130.........140.
 
   157..160.........170.........180.........190.........200.........210.........220.........
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Query Sequence  . . . . . . . LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHE
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Template Sequence  LKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE
Template Known Secondary structure  S




STT

SSSSSSTTS
TT

S


SS
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   142.......150.........160.........170.........180.........190.........200.........210.........220.
 
   230.........240.........250.........260.........270.........280.........290..... ....
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Query Sequence  NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTG. . . . . . . . . . GLQF
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Template Sequence  RVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNI. . RTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPI
Template Known Secondary structure  B

SS

S


S
GGGTTS

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B
TTS
B


TTSB
SSTT
GGGB
BTTT
S



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   222.......230.........240.........250...... ...260.........270.........280.........290.........
 
   300.........310.........320.........330.........340.........350.........360.........370.........
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Query Sequence  TYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLK
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Template Sequence  GTTANKQGRLAGLNMLDKR. RAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGY. YPNAKPLYLK
Template Known Secondary structure  TT

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B


TT

T

SS
TT.STT

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   300.........310........ .320.........330.........340.........350.........360....... ..370.......
 
   380.........390........ .400.........410.........420..... ....430.. .......440.
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Query Sequence  AIVDNKTQRMLGASLLCVD. SHEMINIVKMVMDAGLPYSILRDQIFT. HPSMSES. . . LNDLFSLVK
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Template Sequence  LLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQQAARRAE
Template Known Secondary structure  TTT
BSSSTT
BGGGGGGS




TTT

SS


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   378.380.........390.........400.........410.........420.........430.........440....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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