Job Description P77212 Confidence 99.97% Date Thu Jan 5 12:26:22 GMT 2012 Rank 64 Aligned Residues 293 % Identity 16% Template c2vdcI_ PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L	R	N	K
Query Conservation
Alig confidence				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	.	.	V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	G	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	Y	G	I	P	G	F	K	L	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A
Template Known Secondary structure				.	.							S														T								S	S	S	S		S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	S		T	T	T	S															T
Template Predicted Secondary structure				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T	P	G	.	.	V	Y	D	S	T	G	L	L	N	L	K	E	L	P	G
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		G	V	I	Y	H	P	N	F	E	V	G	R	D	A	S	L	P	E	L	R	R	K	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G	L	G	N	I	V	A	A	L	D	Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E	N	G	S	L	N	A	A	G	K
Template Known Secondary structure		T					T	T			B	T	T	T	B							S	S		S														T	T		S			T	T	T	T																	T	T	T		S	S			T	T		S					S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D	I	I	L	N	A	H	V	E	R	I	S	H	H	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.
Template Sequence		H	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	I	R	Q	G	A	T	S	V	K	C	L	Y	.	.	.	R	R	D	R	K	N	M	P	G	S	Q	R	E	V	A	H	A	E	E	E	G	V	E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G	V	R	A	V	R	I
Template Known Secondary structure								S	S													T	T		S							.	.	.	S	S		S	T	T		S	S											T	T							S	S	S											T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
												229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	N	Q	V	Q	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	.	R	L	H	T	T	A	D	N	I	W	A	M	G	D	V	T	G	G	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																			.
Template Conservation
Template Sequence		H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P	E	L	K	V	T	R	W	G	T	L	L	V	D	H	R	T	K	M	T	N	M	D	G	V	F	A	A	G	D	I	V	R	G	A
Template Known Secondary structure										T	T																S						S													S	T	T	S		B		T	T	S	S	B				T	T	T		B		S	S	T	T					G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	T	Y	I	S	L	D	D	Y	R	I	V	R	D	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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