Job Description P77212 Confidence 100.00% Date Thu Jan 5 12:26:22 GMT 2012 Rank 46 Aligned Residues 383 % Identity 18% Template c2gr2A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) Resolution 1.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		M	N	K	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	W	R	.	.	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L
Query Conservation																														.	.
Alig confidence					.																									.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	A	.	P	V	V	V	L	G	A	G	L	A	S	V	S	F	V	A	E	L	R	Q	A	G	Y	Q	G	L	I	T	V	V	G	D	E	A	E	R	P	Y	D	R	P	P	L	S	K	D	F	M	A	H	G	D	A	E	K	I	R	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	.	S							S														T			S							S	S		S			B		S	G	G	G	G	T								G	G	G	S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		R	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T	P	G	V	.	.	.	.	.	Y	D	S	T	G	L	L	N
Query Conservation																																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																													.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	C	K	R	A	P	E	V	E	W	L	L	G	V	T	A	Q	S	F	D	P	Q	A	H	T	V	A	L	S	D	G	R	T	L	P	Y	G	T	L	V	L	A	T	G	A	A	P	R	A	L	P	T	L	Q	G	A	T	M	P	V	H	T	L	R	T	L	E	D	A	R	R	I	Q	A
Template Known Secondary structure		.	.	.	.	.	.	.		T	T	S		S						T								T	T	T	T					T	T	S						S														G	G	G	T	T		S	S						S	S									T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		L	K	E	L	P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	.	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D	I	I	L	N	A	H	V	E	R	I	S	H	H	E	N	Q	V
Query Conservation																																											.
Alig confidence																																											.																																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	L	R	P	Q	S	R	L	L	I	V	G	G	G	V	I	G	L	E	L	A	A	T	A	R	T	A	G	V	H	V	S	L	V	E	T	Q	P	R	L	M	S	R	A	A	P	A	T	L	A	D	F	V	A	R	Y	H	A	A	Q	G	V	D	L	R	F	E	R	S	V	T	G	S	V	D	G	V	.	.	.
Template Known Secondary structure		T			T	T									S													T	T								S	S	S	S	S		T	T	T	S															T	T						T								T	T		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.											.	.	.	.	300	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N	I	W	A	M	G	D	V	T	G	.	.	.	.	.	.	.	.	.	.	G	L	Q	F	T	Y	I
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		V	L	L	D	D	G	T	R	I	A	A	D	M	V	V	V	G	I	G	V	L	A	N	D	A	L	A	R	A	A	G	.	.	.	.	L	A	C	D	D	G	I	F	V	D	A	Y	G	R	T	T	C	P	D	V	Y	A	L	G	D	V	T	R	Q	R	N	P	L	S	G	R	F	E	R	I	E	T	W	S	N
Template Known Secondary structure					T	T	S						S						S													T	.	.	.	.			B	S	S	S					T	T		B		S	S	T	T					G	G	G						T	T	T	T
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	D	D	Y	R	I	V	R	D	E	L	L	G	E	G	K	R	S	T	D	D	R	K	N	V	P	Y	S	V	F	M	T	P	P	L	S	R	V	G	M	T	E	E	Q	A	R	E	S	G	A	D	I	Q	V	V	T	L	P	V	A	A	I	P	R	A	R	V	M	N	D	T	R	G	V	L	K	A	I	V
Query Conservation
Alig confidence																	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	N	Q	G	I	A	V	A	R	H	L	V	D	P	.	T	A	P	G	Y	A	E	L	P	W	Y	W	S	D	Q	G	A	L	R	I	Q	V	A	G	L	A	S	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	I	V	R	G	E	V	S	L	D	A	P	K	F	T	L	I	E	L
Template Known Secondary structure																T	.	T	S														T	T									S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S				S	S	S
Template Predicted Secondary structure																	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	K	T	Q	R	M	L	G	A	S	L	L	C	V	D	S	H	E	M	I	N	I	V	K	M	V	M	D	A	G	L	P	Y	S	I	L	R	D	Q	I	F	T	H	P	S	M	S	E	S	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	Q	K	G	R	I	V	G	A	T	C	V	N	N	A	R	D	F	A	P	L	R	R	L	L	A	V	G	A	K	P	D	R	A	A	L	A	D	P	A	T	D	L	R	K	L	A	A	A	V
Template Known Secondary structure		.	.		T	T									S														T	T										S	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.