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Job DescriptionP77212
Confidence100.00%DateThu Jan 5 12:26:22 GMT 2012
Rank4Aligned Residues430
% Identity27%Templatec2eq7B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50......... 60.......
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Query Sequence  YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ. . . . . . . . . . . . . . . . QHTDFVRA
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Template Sequence  YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL. GGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL
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STT

SSSSS.SS

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   2.......10.........20.........30...... ...40.........50.........60.........70.........80
 
   68.70.........80.........90.........100.........110.........120.........130.........140.......
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Query Sequence  IQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYD
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Template Sequence  MAHKDKVVQANTQGVEFLFKKNG. . . IARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDY. ERVVT
Template Known Secondary structure  TT...
S
SSSSTTTT





TTB


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   81........90.........100... ......110.........120.........130.........140.........150. .....
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  STGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISH
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Template Sequence  STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVP
Template Known Secondary structure  TS
SS

S

STT

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TTS
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   228.230... ......240.........250.........260.........270.........280.........290.........300......
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Query Sequence  HENQVQ. VHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFTYISLDD
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Template Sequence  EAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEE
Template Known Secondary structure  TTTTS
S
S


TT

GGGGT



TTS




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SSTT
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   307..310.........320.........330.........340.........350.........360.........370.........380......
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Query Sequence  YRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKT
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Template Sequence  GIAAVEHMVRGFGH. . VDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKT
Template Known Secondary structure  S


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GGG


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   317..320.........330 .........340.........350.........360.........370.........380.........390....
 
   387..390.........400.........410.........420.........430.........440
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Query Sequence  QRMLGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLV
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Template Sequence  DRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAA
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BTTTT
BS


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   395....400.........410.........420.........430.........440........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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