Job Description P77212 Confidence 100.00% Date Thu Jan 5 12:26:22 GMT 2012 Rank 30 Aligned Residues 411 % Identity 20% Template c2bcpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		M	N	K	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	.	.	.	G	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F
Query Conservation																											.	.	.
Alig confidence					.																						.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	G	S	.	K	I	V	V	V	G	A	N	H	A	G	T	A	C	I	K	T	M	L	T	N	Y	G	D	A	N	E	I	V	V	F	D	Q	N	S	N	I	S	F	L	G	S	G	M	A	L	W	I	G	E	Q	I	A	G	P	E	G	L	F	Y	S	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.								S															G	G	G	S							S	S	S				B		T	T							T	T	S	S	S	S	S	T	T	S	B					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		0	.	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		L	R	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	.	.	.	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T	P	G	V	Y	D	S	T	G	L	L	N	L
Query Conservation																				.	.	.
Alig confidence		.	.	.	.	.	.	.												.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	E	L	E	S	L	G	A	K	V	Y	M	E	S	P	V	Q	S	I	D	Y	D	A	K	T	V	T	A	L	V	D	G	K	N	H	V	E	T	Y	D	K	L	I	F	A	T	G	S	Q	P	I	L	P	P	I	K	G	A	E	I	K	E	G	S	L	E	F	E	A	T	L	E	N
Template Known Secondary structure		.	.	.	.	.	.	.					T	T	T					T	T								T	T	T	T						S	S	S	S							S														S		B	T			B		T	T		S	S			B	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		155	.	.																			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence		K	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	.	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation
Template Sequence		L	Q	F	V	K	L	Y	Q	N	S	A	D	V	I	A	K	L	E	N	K	D	I	K	R	V	A	V	V	G	A	G	Y	I	G	V	E	L	A	E	A	F	Q	R	K	G	K	E	V	V	L	I	D	V	V	D	T	C	L	A	G	Y	Y	D	R	D	L	T	D	L	M	A	K	N	M	E	E	H	G	I	Q
Template Known Secondary structure						S	S											T	T		T	T										S													T	T								S	S	S	S	S	S	T	T	T	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	L	N	A	H	V	E	R	I	S	H	H	E	N	Q	V	Q	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N	I	W	A	M	G	D	V	T	G
Query Conservation
Alig confidence																																														.	.	.
Template Conservation																																														.	.	.
Template Sequence		L	A	F	G	E	T	V	K	E	V	A	G	N	G	K	V	E	K	I	I	T	D	K	N	E	Y	D	V	D	M	V	I	L	A	V	G	F	R	P	N	T	T	L	G	.	.	.	N	G	K	I	D	L	F	R	N	G	A	F	L	V	N	K	R	Q	E	T	S	I	P	G	V	Y	A	I	G	D	C	A	T
Template Known Secondary structure					S									S	S	S							S	S						S													G	G	G	.	.	.	T	T	S	S		B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	B
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
												296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	G	L	Q	F	T	Y	I	S	L	D	D	Y	R	I	V	R	D	E	L	L	G	E	G	K	R	S	T	D	D	R	K	N	V	P	Y	S	V	F	M	T	P	P	L	S	R	V	G	M	T	E	E	Q	A	R	E	S	G	A	D	I	Q	V	V	T	L	P	V	A	A	I
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																					.
Template Sequence		I	Y	D	N	A	T	R	D	T	N	Y	I	A	L	A	S	N	A	V	R	T	G	I	V	A	A	H	N	A	C	G	T	D	L	E	.	G	I	G	V	Q	G	S	N	G	I	S	I	Y	G	L	H	M	V	S	T	G	L	T	L	E	K	A	K	R	L	G	F	D	A	A	V	T	E	Y	T	D	N	Q	K
Template Known Secondary structure					T	T	T	T																							T	T					.				B									T	T																T	T												S	S
Template Predicted Secondary structure																																					.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																																		.																													.
Query SS confidence																																		.																													.
Query Sequence		P	R	A	R	V	M	N	D	T	R	G	V	L	K	A	I	V	D	N	K	T	Q	R	M	L	G	A	S	L	L	C	V	.	D	S	H	E	M	I	N	I	V	K	M	V	M	D	A	G	L	P	Y	S	I	L	R	D	Q	I	F	T	.	H	P	S	M	S	E	S	L	N	D	L
Query Conservation																																		.																													.
Alig confidence																																		.																													.
Template Conservation
Template Sequence		P	E	F	I	E	H	G	N	F	P	V	T	I	K	I	V	Y	D	K	D	S	R	R	I	L	G	A	Q	M	A	A	R	E	D	V	S	M	G	I	H	M	F	S	L	A	I	Q	E	G	V	T	I	E	K	L	A	L	T	D	I	F	F	L	P	H	F	N	K	P	Y	N	Y	I
Template Known Secondary structure			T	T			S	S												T	T	T		B									S	S			T	T												T		B						T	S						T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.