Job Description P77212 Confidence 100.00% Date Thu Jan 5 12:26:22 GMT 2012 Rank 13 Aligned Residues 436 % Identity 29% Template c1v59B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ Resolution 2.20 Å

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		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																				.	.	.	.	60
Predicted Secondary structure					.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	K	.	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	A	Q	Q
Query Conservation					.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																				.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.
Template Sequence		I	N	K	S	H	D	V	V	I	I	G	G	G	P	A	G	Y	V	A	A	I	K	A	A	Q	L	G	F	N	T	A	C	V	E	K	R	G	K	L	.	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	N	N	S	H	L	F	H	Q	M	H	T	E	A	Q	K	R	G	I	D	V	N	G	D	I
Template Known Secondary structure														S													T	T								S	S	S	S	S	.	S							S																				S	S	G	G	G	T				S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L	R	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	.	.	.	.	.	.	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P
Query Conservation																																																							.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	N	V	A	N	F	Q	K	A	K	D	D	A	V	K	Q	L	T	G	G	I	E	L	L	F	K	K	N	K	V	T	Y	Y	K	G	N	G	S	F	E	D	E	T	K	I	R	V	T	P	V	D	G	L	E	G	T	V	K	E	D	H	I	L	D	V	K	N	I	I	V	A	T	G	S	E	V	T	P	F
Template Known Secondary structure																														T	T						S					S	S	S	S								S	S		T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	P	G	I	T	T	T	P	G	V	Y	D	S	T	G	L	L	N	L	K	E	L	P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		P	G	I	E	I	D	E	.	E	K	I	V	S	S	T	G	A	L	S	L	K	E	I	P	K	R	L	T	I	I	G	G	G	I	I	G	L	E	M	G	S	V	Y	S	R	L	G	S	K	V	T	V	V	E	F	Q	P	Q	I	G	A	S	M	D	G	E	V	A	K	A	T	Q	K	F	L	K	K	Q	G	L
Template Known Secondary structure		T	T				B	T	.	T	T								T	T		S	S			S								S													T	T								S	S	S	S	S	S	S	S	S															T	T
Template Predicted Secondary structure									.
Template SS confidence
		161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		D	I	I	L	N	A	H	V	E	R	I	S	H	H	E	N	Q	V	Q	V	H	.	.	.	.	.	.	.	.	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	K	L	S	T	K	V	I	S	A	K	R	N	D	D	K	N	V	V	E	I	V	V	E	D	T	K	T	N	K	Q	E	N	L	E	A	E	V	L	L	V	A	V	G	R	R	P	Y	I	A	G	L	G	A	E	K	I	G	L	E	V	D	K	R	G	R	L	V	I	D	D	Q	F	N	S	K	F	P	H
Template Known Secondary structure					T	T										T	T	T	T									T	T	T	T								S						S							T	T	S						T			B		T	T	S		B				T	T	S	B		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	A	M	G	D	V	T	G	G	L	Q	F	T	Y	I	S	L	D	D	Y	R	I	V	R	D	E	L	L	G	E	G	K	R	S	T	D	D	R	K	N	V	P	Y	S	V	F	M	T	P	P	L	S	R	V	G	M	T	E	E	Q	A	R	E	S	G	A	D	I	Q	V	V	T	L	P	V	A	A	I	P
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		I	K	V	V	G	D	V	T	F	G	P	M	L	A	H	K	A	E	E	E	G	I	A	A	V	E	M	L	K	T	G	H	G	H	.	.	V	N	Y	N	N	I	P	S	V	M	Y	S	H	P	E	V	A	W	V	G	K	T	E	E	Q	L	K	E	A	G	I	D	Y	K	I	G	K	F	P	F	A	A	N	S
Template Known Secondary structure						G	G	G	S	S	S																					S				.	.			T	T	S							S	S	S														T	T	T										G	G	G
Template Predicted Secondary structure																																				.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	R	V	M	N	D	T	R	G	V	L	K	A	I	V	D	N	K	T	Q	R	M	L	G	A	S	L	L	C	V	D	S	H	E	M	I	N	I	V	K	M	V	M	D	A	G	L	P	Y	S	I	L	R	D	Q	I	F	T	H	P	S	M	S	E	S	L	N	D	L	F	S	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	K	T	N	Q	D	T	E	G	F	V	K	I	L	I	D	S	K	T	E	R	I	L	G	A	H	I	I	G	P	N	A	G	E	M	I	A	E	A	G	L	A	L	E	Y	G	A	S	A	E	D	V	A	R	V	C	H	A	H	P	T	L	S	E	A	F	K	E	A	N	M	A	A
Template Known Secondary structure						T	T												T	T	T		B									T	T															T		B						T	S				T	T		T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.