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Job DescriptionP77212
Confidence100.00%DateThu Jan 5 12:26:22 GMT 2012
Rank2Aligned Residues434
% Identity28%Templatec1ojtA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   2.......10.........20.........30.........40.........50..... ....60....
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Query Sequence  NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLV. . . . . . . . . . . . . . . . . HDAQQHTDF
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Template Sequence  AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL. GGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI
Template Known Secondary structure 

STT

SSS
S.SSGGGGT








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   121........130.........140.........150....... ..160.........170.........180.........190.........
 
   65....70.........80.........90.........100.........110 .........120.........130....
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Query Sequence  VRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVH. . . . . . . . . . RPEGNLEIHGEKIFINTGAQTVVP
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Template Sequence  DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL
Template Known Secondary structure  TT
TTTT





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   200.........210.........220.........230.........240.........250.........260.........270.........
 
   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  PIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGV
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Template Sequence  PFIP. . EDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFD
Template Known Secondary structure  SS

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TT
TT




SS
ST

SSSSSSTTS
GGG
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   280... ......290.........300.........310.........320.........330.........340.........350.......
 
   215....220.........230......... 240.........250.........260.........270.........280.........
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Query Sequence  DIILNAHVERISHHENQVQVHSEHA. . . . . QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWA
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Template Sequence  NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYA
Template Known Secondary structure 
S
TTSSS

SS
S




GGGTTGGGTT



TTS




TTSB
SSTT
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   358.360.........370.........380.........390.........400.........410.........420.........430.......
 
   290.........300.........310.........320.........330.........340.........350.........360.........
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Query Sequence  MGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRAR
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Template Sequence  IGDIVGQPMLAHKAVHEGHVAAENCAGHK. . AYFDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAI
Template Known Secondary structure 
GGGT
SS

TT

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   438.440.........450.........460...... ...470.........480.........490.........500.........510.....
 
   370.........380.........390.........400.........410.........420.........430.........440
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Query Sequence  VMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLV
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Template Sequence  ANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVA
Template Known Secondary structure  TT

S
TTT
BSTTTT
BTS


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   516...520.........530.........540.........550.........560.........570.........580......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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