Job Description P77212 Confidence 100.00% Date Thu Jan 5 12:26:22 GMT 2012 Rank 45 Aligned Residues 422 % Identity 15% Template c1m6iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif) Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																																						.
Query SS confidence																													.	.																																						.
Query Sequence		M	N	K	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	W	.	.	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	.	V	R	A	I	Q	R	K	N	E	V	V	N	F
Query Conservation																													.	.																																						.
Alig confidence																													.	.																																						.
Template Conservation
Template Sequence		P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	P	N	V	T	K	T	L	R	F	K	Q	W	N	G	K	E	R	S	I	Y	F	Q	P	P	S	F
Template Known Secondary structure			S								S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G				T										T	T	S					S	B	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140										.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	.	.	.	.	.	.	.	.	.	T	T	P	G	V	Y	D	S
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	S	A	Q	D	L	P	H	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	Q	L	D	V	R	D	N	M	V	K	L	N	D	G	S	Q	I	T	Y	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K	S	R	T	T	L	F	R	K	I	G	D	F
Template Known Secondary structure		S	B		T	T	T	T	T	T	S	T	T								T								G	G	G	T					T	T	S																								T	S							T						S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		T	G	L	L	N	L	K	E	L	P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	.	.	.	.	.	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D	I	I	L	N	A	H	V	E
Query Conservation																																			.	.	.	.	.
Alig confidence																																			.	.	.	.	.
Template Conservation
Template Sequence		R	S	L	E	K	I	S	R	E	V	K	S	I	T	I	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	A	R	A	L	G	T	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	E	Y	L	S	N	W	T	M	E	K	V	R	R	E	G	V	K	V	M	P	N	A	I	V	Q
Template Known Secondary structure												S								S																		T								S	S	S	S	T	T	T	T	T	S														T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		224	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure											.																																																																.	.	.	.	.	.	.
Query SS confidence											.																																																																.	.	.	.	.	.	.
Query Sequence		R	I	S	H	H	E	N	Q	V	.	Q	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N	I	W	A	M	G	D	V	T	G	.	.	.	.	.	.	.
Query Conservation											.																																																																.	.	.	.	.	.	.
Alig confidence											.																																				.																.												.	.	.	.	.	.	.
Template Conservation																																															.																.
Template Sequence		S	V	G	V	S	S	G	K	L	L	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	A	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E	I	D	.	S	D	F	G	G	F	R	V	N	A	E	L	Q	A	R	.	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L	G
Template Known Secondary structure							T	T							T	T	S						S													T	T					T			B		.	T	T	T		S					T	T					.	T	T					G	G	G						T	T	T
Template Predicted Secondary structure																																															.																.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
				296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.										.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure		.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	G	L	Q	F	T	Y	I	S	L	D	D	Y	R	I	V	R	D	E	L	L	G	E	G	K	R	S	T	D	D	.	.	.	.	.	.	.	.	.	R	K	N	V	P	Y	S	V	F	M	T	P	P	L	S	R	V	G	M	T	E	E	Q	A	R	E	S	G	A	D	I	Q	V	V	T	L	P	V	A	A
Query Conservation		.	.																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M	T	G	A	A	K	P	Y	W	H	Q	S	M	F	W	S	D	L	G	P	D	V	G	Y	E	A	I	G	L	V	D	S	S	L	P	T	V	G	V	F	A	K	A	T	A	Q	D	N	P	K	S	A	T	E	Q	S	G	T	G	I
Template Known Secondary structure																							T	S															S	S	T	T											T	T	S											T	T		S									S		S
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	R	A	R	V	M	N	D	T	R	G	V	L	K	A	I	V	D	N	K	T	Q	R	M	L	G	A	S	L	L	C	V	D	S	H	E	M	I	N	I	V	K	M	V	M	D	A	G	L	P	Y	S	I	L	R	D	Q	I	F	T	H
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		R	S	E	S	E	T	E	S	E	A	S	Y	G	K	G	V	I	F	Y	L	R	D	K	V	V	V	G	I	V	L	W	N	I	F	N	.	.	R	M	P	I	A	R	K	I	I	K	D	G	E	Q	H	E	D	L	N	E	V	A	K	L	F
Template Known Secondary structure						S		S															T	T									S			S	.	.														B		S		S	T	T	G	G	G	G
Template Predicted Secondary structure																																					.	.
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.			.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.