Job Description P77212 Confidence 100.00% Date Thu Jan 5 12:26:22 GMT 2012 Rank 22 Aligned Residues 426 % Identity 27% Template c1lvlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution Resolution 2.45 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																					.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.
Template Sequence		Q	T	T	L	L	I	I	G	G	G	P	G	G	Y	V	A	A	I	R	A	G	Q	L	G	I	P	T	V	L	V	E	G	Q	A	L	G	G	T	.	.	C	L	N	I	G	C	I	P	S	K	A	L	I	H	V	A	E	Q	F	H	Q	A	S	R	F	T	E	P	S	P	L	G	I	S	V	A	S	P	R	L
Template Known Secondary structure				S							S														T								S	S		T	T			.	.					S																				T	T	S			T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L	R	N	K	N	F	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T
Query Conservation
Alig confidence																.																																	.	.	.	.																												.	.
Template Conservation																.																																	.	.	.	.																												.	.
Template Sequence		D	I	G	Q	S	V	A	W	K	D	G	I	V	D	.	R	L	T	T	G	V	A	A	L	L	K	K	H	G	V	K	V	V	H	G	W	A	K	V	L	D	G	K	Q	V	E	V	.	.	.	.	D	G	Q	R	I	Q	C	E	H	L	L	L	A	T	G	S	S	S	V	E	L	P	M	L	P	L	G	.	.
Template Known Secondary structure																.													T	T						S							T	T					.	.	.	.	T	T						S													B	T	T	B			B	.	.
Template Predicted Secondary structure																.																																	.	.	.	.																												.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	V	Y	D	S	T	G	L	L	N	L	K	E	L	P	G	H	L	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D	I	I	L	N	A	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	V	I	S	S	T	E	A	L	A	P	K	A	L	P	Q	H	L	V	V	V	G	G	G	Y	I	G	L	E	L	G	I	A	Y	R	K	L	G	A	Q	V	S	V	V	E	A	R	E	R	I	L	P	T	Y	D	S	E	L	T	A	P	V	A	E	S	L	K	K	L	G	I	A	L	H	L	G	H	S	V
Template Known Secondary structure		T	T								T			S	S			S								S														T								S	S	S	S	S	S	T	T	S																T					T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		E	R	I	S	H	H	E	N	Q	V	Q	.	V	H	S	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N	I	W	A	M	G	D	V	T	G	G	L	Q	F	T	Y
Query Conservation													.
Alig confidence													.																																								.
Template Conservation																																																					.
Template Sequence		E	G	Y	E	N	G	C	L	L	A	N	D	G	K	G	G	Q	L	R	L	E	A	D	R	V	L	V	A	V	G	R	R	P	R	T	K	G	F	N	L	E	C	L	D	L	K	M	N	G	A	A	.	I	A	I	D	E	R	C	Q	T	S	M	H	N	V	W	A	I	G	D	V	A	G	E	P	M	L	A	H
Template Known Secondary structure						T	T							S	S	S								S													S	S	S	S	G	G	G	S						T	T		.					T	T		B		S	S	T	T					G	G	G	G		S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	L	D	D	Y	R	I	V	R	D	E	L	L	G	E	G	K	R	S	T	D	D	R	K	N	V	P	Y	S	V	F	M	T	P	P	L	S	R	V	G	M	T	E	E	Q	A	R	E	S	G	A	D	I	Q	V	V	T	L	P	V	A	A	I	P	R	A	R	V	M	N	D	T	R	G	V	L	K	A	I
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		R	A	M	A	Q	G	E	M	V	A	E	I	I	A	G	K	A	R	R	.	.	F	E	P	A	A	I	A	A	V	C	F	T	D	P	E	V	V	V	V	G	K	T	P	E	Q	A	S	Q	Q	G	L	D	C	I	V	A	Q	F	P	F	A	A	N	G	R	A	M	S	L	E	S	K	S	G	F	V	R	V	V
Template Known Secondary structure															T	T					.	.				S								S	S	S															T	T										G	G	G							T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	N	K	T	Q	R	M	L	G	A	S	L	L	C	V	D	S	H	E	M	I	N	I	V	K	M	V	M	D	A	G	L	P	Y	S	I	L	R	D	Q	I	F	T	H	P	S	M	S	E	S	L	N	D	L	F	S	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	R	D	N	H	L	I	L	G	W	Q	A	V	G	V	A	V	S	E	L	S	T	A	F	A	Q	S	L	E	M	G	A	C	L	E	D	V	A	G	T	I	H	A	H	P	T	L	G	E	A	V	Q	E	A	A	L	R	A
Template Known Secondary structure				T	T	T		B									T	T	G	G	G												T		B						T	S				T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.