Phyre 2 alignment of P77212 with c1fl2A

Job Description P77212
Confidence 99.97% Date Thu Jan 5 12:26:22 GMT 2012

Rank 58 Aligned Residues 290

% Identity 21% Template c1fl2A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: catalytic core component of the alkylhydroperoxide reductase ahpf from2 e.coli

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	Q	A	V	I	I	G	F	G	K	A	G	K	T	L	A	V	T	L	A	K	A	G	W	R	V	A	L	I	E	Q	S	N	A	M	Y	G	G	T	C	I	N	I	G	C	I	P	T	K	T	L	V	H	D	A	Q	Q	H	T	D	F	V	R	A	I	Q	R	K	N	E	V	V	N	F	L	R	N	K	N	F
Query Conservation
Alig confidence																																	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	I	R	T	G	L	M	G	E	R	.	.	.	F	G	G	Q	I	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	.	.	.	.	.	.	.	.	.	.	.	T	E	G	Q	K	L	A	G	A	L	K	V	H	V	D
Template Known Secondary structure									S												T	T	T								S	S	.	.	.	T	T	G	G	G	G	G							B	T	T	B	S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.												.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence	H	N	L	A	D	M	P	N	I	D	V	I	D	G	Q	A	E	F	I	N	N	H	S	L	R	V	H	R	P	E	G	N	L	E	I	H	G	E	K	I	F	I	N	T	G	A	Q	T	V	V	P	P	I	P	G	I	T	T	T	P	G	.	.	V	Y	D	S	T	G	L	L	N	L	K	E	L	P	G	H	L
Query Conservation																																																														.	.
Alig confidence																																																														.	.
Template Conservation
Template Sequence	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V
Template Known Secondary structure	T	S							S										S	S	T	T								T	T	S																						T	T	T	T	T	T	B	T	T	T			S						G	G	G	G	B	T
Template Predicted Secondary structure
Template SS confidence
	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence	G	I	L	G	G	G	Y	I	G	V	E	F	A	S	M	F	A	N	F	G	S	K	V	T	I	L	E	A	A	S	L	F	L	P	R	E	D	R	D	I	A	D	N	I	A	T	I	L	R	D	Q	G	V	D	I	I	L	N	A	H	V	E	R	I	S	H	H	E	N	Q	V	Q	V	H	S	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.
Alig confidence																																						.	.	.	.	.																																		.	.	.	.	.
Template Conservation																																						.	.	.	.	.
Template Sequence	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	Q	V	.	.	.	.	.	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V
Template Known Secondary structure						S												T	T	B	S							S	S	S	S			S				.	.	.	.	.							T		T	T					S	S									S	S	S	S									T	T
Template Predicted Secondary structure																																						.	.	.	.	.
Template SS confidence
	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.						.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

			237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure	.	.																																																														.
Query SS confidence	.	.																																																														.
Query Sequence	.	.	E	H	A	Q	L	A	V	D	A	L	L	I	A	S	G	R	Q	P	A	T	A	S	L	H	P	E	N	A	G	I	A	V	N	E	R	G	A	I	V	V	D	K	R	L	H	T	T	A	D	N	I	W	A	M	G	D	V	T	G	G	L	.	Q	F	T	Y	I	S	L	D	D	Y	R	I	V	R	D	E
Query Conservation	.	.																																																														.
Alig confidence	.	.																								.	.	.																																				.
Template Conservation																										.	.	.
Template Sequence	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	.	.	.	E	G	A	V	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S
Template Known Secondary structure	T									S						S					S		G	G	G	.	.	.	T	T	T	S		B		T	T	S		B				T	T		B		S	S	T	T					S	T	T	B	S		S	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
	434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510

	314	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	511	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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