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Job DescriptionP33666
Confidence99.92%DateWed Jan 25 15:20:50 GMT 2012
Rank4Aligned Residues239
% Identity18%Templatec3qq2C_
PDB info PDB header:membrane protein/protein transportChain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1732.......1740.........1750.........1760.........1770. ........1780.........1790.........1800........
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Query Sequence  GLAFNVVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMS. . . LEYGIARLDGDGAQKAGDNGVTGGYSQFFGLKHQMSF
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Template Sequence  GPWARTFSERQQISN. . . . . AYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGDGGGKVKGLHVGGYAAYVG
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   748.750.........760.. .......770.........780.........790.........800.........810.........820..
 
   18091810.........1820.........1830.........1840.........1850.........1860.........1870.........1880........
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Query Sequence  DNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNA
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Template Sequence  DGGYYLDTVLRLGRYDQQYNIAGTDGG. . . RVTADYRTSGAAWSLEGGRRFELPNDWFAEPQAEVMLWRTSGKRYRASN.
Template Known Secondary structure  SSSB


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   827..830.........840.........850... ......860.........870.........880.........890.........900..
 
   18891890.........1900.........1910... ......1920.........1930.........1940.........1950.........1960......
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Query Sequence  GDFNLNMNSGSETAVDSIVGLKLDY. . AGKDGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTS
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Template Sequence  . . . GLRVKVDANTATLGRLGLRFGRRIALAGGNIVQPYARLGWTQEFKSTGR. . . . . . . . . . . . . . . . . . . . . HGRVELG
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   903......910.........920.........930.........940.........950. .......
 
   1967..1970.. .......1980.. .......1990.........2000...
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Query Sequence  VGVKYS. SKESSLNLDA. YNWKEDGISDKGVMLNFKKTF
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Template Sequence  AGVDAALGKGHNLYASYEYAAGDRINIPWSFHAGYRYSF
Template Known Secondary structure 
GGGB

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   972.......980.........990.........1000.........1010
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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