Job Description P33666 Confidence 21.71% Date Wed Jan 25 15:20:50 GMT 2012 Rank 115 Aligned Residues 216 % Identity 7% Template c3ohnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain Resolution 3.01 Å

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		1788	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.			.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		G	D	N	G	V	T	G	G	Y	S	Q	F	F	G	L	K	H	Q	M	S	F	D	N	G	M	N	W	N	N	A	L	R	Y	D	V	.	.	H	N	L	D	S	S	R	S	I	A	F	G	N	T	N	K	T	A	D	T	D	V	K	Q	Q	Y	L	E	F	R	S	E	G	A	K	T	F	E	P	S	E	G	L
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		E	A	D	G	S	T	Q	I	F	T	V	P	Y	S	S	V	P	L	L	Q	R	E	G	H	T	R	Y	S	I	T	A	G	E	Y	R	S	G	N	A	Q	Q	E	K	P	R	F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q	L	A	D	R	Y	R	A	F	N	F	G	I	G	K
Template Known Secondary structure			S	S	S																		T	T															S	T	T																G	G	G											S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		1866	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.														.	1920	.	.	.	.	.	.	.	.	.	1930	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	T	P	Y	A	G	V	K	L	R	H	T	L	E	G	G	Y	Q	E	R	N	A	G	D	F	N	L	N	M	N	S	G	S	E	T	A	V	D	S	I	V	G	L	K	L	D	Y	A	G	K	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	A	S	A	T	L	E	G	G	P	N	L	S
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S	T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	G	T	N	I	Q	L	V	G	Y	R	Y	S	T	S	G	Y	F	N	F	A	D	T	T	Y	S	R	M	N	G	T	D	Y	Y	N	L	A	Y	N	K	R	G	K
Template Known Secondary structure					T	T															T	T																															T	T								S	S		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		1933	.	.	.		.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.			.	.	.	.	.	.	.	.	2000	.	.	.
Predicted Secondary structure						.																																																								.	.
Query SS confidence						.																																																								.	.
Query Sequence		Y	A	K	S	.	Q	R	T	A	S	L	A	G	A	G	S	Q	H	F	N	V	D	D	G	Q	K	G	G	G	I	N	S	L	T	S	V	G	V	K	Y	S	S	K	E	S	S	L	N	L	D	A	Y	N	W	K	E	D	G	I	S	.	.	D	K	G	V	M	L	N	F	K	K	T	F
Query Conservation						.																																																								.	.
Alig confidence						.																																																								.	.
Template Conservation
Template Sequence		L	Q	L	T	V	T	Q	Q	L	G	R	T	S	T	L	Y	L	S	G	S	H	Q	T	Y	W	G	T	S	N	V	D	E	Q	F	Q	A	G	L	N	T	A	F	E	D	I	N	W	T	L	S	Y	S	L	T	K	N	A	W	Q	K	G	R	D	Q	M	L	A	L	N	V	N	I	P	F
Template Known Secondary structure											T	T	T													S	S	S																S	S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions