Job Description P33666 Confidence 86.94% Date Wed Jan 25 15:20:50 GMT 2012 Rank 22 Aligned Residues 130 % Identity 12% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		1835	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	N	K	T	A	D	T	D	V	K	Q	Q	Y	L	E	F	R	S	E	G	A	K	T	F	E	P	S	E	G	L	K	V	T	P	Y	A	G	V	K	L	R	H	T	L	E	G	G	Y	Q	E	R	N	A	G	D	F	N	L	N	M	N	S	G	S	E	T	A	V	D	S	I	V	G	L	K	L	D	Y	A
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	W	W	A	S	M	E	S	N	T	W	N	T	I	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D
Template Known Secondary structure		S																										S	S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																								.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		1915	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.		.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.
Predicted Secondary structure																																																														.																		.	.
Query SS confidence																																																														.																		.	.
Query Sequence		G	K	D	G	W	S	A	S	A	T	L	E	G	G	P	N	L	S	Y	A	K	S	Q	R	T	A	S	L	A	G	A	G	S	Q	H	F	N	V	D	D	G	Q	K	G	G	G	I	N	S	L	T	S	V	G	V	K	Y	S	S	K	.	E	S	S	L	N	L	D	A	Y	N	W	K	E	D	G	I	S	.	.
Query Conservation																																																														.																		.	.
Alig confidence																	.																						.	.	.	.	.	.	.	.	.	.	.	.	.											.																		.	.
Template Conservation																	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	.	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N
Template Known Secondary structure			S	S	S												.		S	S					T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S													S	S	S				T	T
Template Predicted Secondary structure																	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.														.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
								1992	.	.	.	.	.	.	.	2000	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	K	G	V	M	L	N	F	K	K
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M
Template Known Secondary structure		S	S	S													S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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