Job Description P33666 Confidence 41.28% Date Wed Jan 25 15:20:50 GMT 2012 Rank 44 Aligned Residues 213 % Identity 9% Template c2vqiA_ PDB info PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore Resolution 3.2 Å

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		1788	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	N	G	V	T	G	G	Y	S	Q	F	F	G	L	K	H	Q	M	S	F	D	N	G	M	N	W	N	N	A	L	R	Y	D	V	H	N	L	D	S	S	R	S	I	A	F	G	N	T	N	K	T	A	D	T	D	V	K	Q	Q	Y	L	E	F	R	S	E	G	A	K	T	F	E	P	S	E	G	L	K	V
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		E	Q	N	G	R	K	K	T	F	Q	V	D	T	A	S	V	P	Y	L	T	R	P	G	Q	V	R	Y	K	L	V	S	G	R	S	R	G	Y	E	G	.	.	P	V	F	A	T	G	E	A	S	W	G	L	S	N	Q	W	S	L	Y	G	G	A	V	L	A	G	D	Y	N	A	L	A	A	G	A	G	W	D	L
Template Known Secondary structure			T	T	S																		T	T																	.	.													S	S	S											S	S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		1868	.	1870	.	.	.			.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.													.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.
Predicted Secondary structure								.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	Y	A	G	V	.	.	K	L	R	H	T	L	E	G	G	Y	Q	E	R	N	A	G	D	F	N	L	N	M	N	S	G	S	E	T	A	V	D	S	I	V	G	L	K	L	D	Y	A	G	.	.	.	.	.	.	.	.	.	.	.	.	K	D	G	W	S	A	S	A	T	L	E	G	G	P	N	L	S	Y
Query Conservation								.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	P	G	T	L	S	A	D	I	T	Q	S	V	A	R	I	E	G	E	R	T	F	Q	G	K	S	W	R	L	S	Y	S	K	R	F	D	D	I	T	F	A	G	Y	R	F	S	E	R	N	Y	X	T	X	E	Q	Y	L	N	A	R	Y	R	N	D	Y	S	S	R	E	K	E	X	Y	T	V	T	L	N	K
Template Known Secondary structure		S	S	S															T	T	T																													T	T													S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		1934	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	S	Q	R	T	A	S	L	A	G	A	G	S	Q	H	F	N	V	D	D	G	Q	K	G	G	G	I	N	S	L	T	S	V	G	V	K	Y	S	S	K	E	S	S	L	N	L	D	A	Y	N	W	K	E	D	G	I	S	D	K	G	V	M	L	N	F	K	K	T	F
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		N	V	A	D	W	N	T	S	F	N	L	Q	Y	S	R	Q	T	Y	.	W	D	I	R	K	T	D	Y	Y	T	V	S	V	N	R	Y	F	N	V	F	L	Q	G	V	A	V	G	L	S	A	S	R	S	K	Y	L	G	R	D	N	D	S	A	Y	L	R	I	S	V	P	L
Template Known Secondary structure				T	T	T	T													.	S	S	S																S	S	S															T	T
Template Predicted Secondary structure																				.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions