 |
Job Description | P58095 | Confidence | 3.72% | Date | Thu Jan 5 12:06:39 GMT 2012 |
Rank | 40 | Aligned Residues | 48 |
% Identity | 10% | Template | c2kdkA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:aryl hydrocarbon receptor nuclear translocator-like protein |
PDBTitle: structure of human circadian clock protein bmal2 c-terminal pas domain
|
Resolution | UNK |
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | G | L | P | Q | W | A | S | A | D | C | V | A | G | P | L | V | S | A | G | I | T | D | I | N | I | E | D | D | Q | G | I | H | V | R | L | I | V | R | D | A | E | G | R | M | V | W |
Query Conservation |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|
|
|
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|   |   |
|
|
Template Sequence |   |
L | L | G | T | S | C | Y | E | Y | F | H | Q | D | D | H | N | N | L | T | D | K | H | K | A | V | L | Q | S | K | E | K | I | L | T | D | S | Y | K | F | R | A | K | D | G | S | F | V | T |
Template Known Secondary structure |   |
S | B | T | S | B | T | T | T | T | B |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S | S |
|  |  |  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
348 | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|