Job Description Q57261 Confidence 100.00% Date Thu Jan 5 12:37:16 GMT 2012 Rank 1 Aligned Residues 341 % Identity 99% Template c1sb7A_ PDB info PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	E	F	D	N	L	T	Y	L	H	G	K	P	Q	G	T	G	L	L	K	A	N	P	E	D	F	V	V	V	E	D	L	G	F	E	P	D	G	E	G	E	H	I	L	V	R	I	L	K	N	G	C	N	T	R	F	V	A	D	A	L	A	K	F	L	K	I	H	A	R	E	V	S	F	A	G	Q	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	I	E	F	D	N	L	T	Y	L	H	G	K	P	Q	G	T	G	L	L	K	A	N	P	E	D	F	V	V	V	E	D	L	G	F	E	P	D	G	E	G	E	H	I	L	V	R	I	L	K	N	G	C	N	T	R	F	V	A	D	A	L	A	K	F	L	K	I	H	A	R	E	V	S	F	A	G	Q	K	D
Template Known Secondary structure					G	G	G	S			S	S		S		S	S	B		B	S		S	S	G	G	G								S	S				S		S	S										S	S													T	T	S		G	G	G				S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	A	V	T	E	Q	W	L	C	A	R	V	P	G	K	E	M	P	D	L	S	A	F	Q	L	E	G	C	Q	V	L	E	Y	A	R	H	K	R	K	L	R	L	G	A	L	K	G	N	A	F	T	L	V	L	R	E	V	S	N	R	D	D	V	E	Q	R	L	I	D	I	C	V	K	G	V	P	N	Y	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	A	V	T	E	Q	W	L	C	A	R	V	P	G	K	E	X	P	D	L	S	A	F	Q	L	E	G	C	Q	V	L	E	Y	A	R	H	K	R	K	L	R	L	G	A	L	K	G	N	A	F	T	L	V	L	R	E	V	S	N	R	D	D	V	E	Q	R	L	I	D	I	C	V	K	G	V	P	N	Y	F
Template Known Secondary structure		T	T	S												S	S					T	T	S				T	T										S	S				T	T													S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	Q	R	F	G	I	G	G	S	N	L	Q	G	A	Q	R	W	A	Q	T	N	T	P	V	R	D	R	N	K	R	S	F	W	L	S	A	A	R	S	A	L	F	N	Q	I	V	A	E	R	L	K	K	A	D	V	N	Q	V	V	D	G	D	A	L	Q	L	A	G	R	G	S	W	F	V	A	T	T	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	Q	R	F	G	I	G	G	S	N	L	Q	G	A	Q	R	W	A	Q	T	N	T	P	V	R	D	R	N	K	R	S	F	W	L	S	A	A	R	S	A	L	F	N	Q	I	V	A	E	R	L	K	K	A	D	V	N	Q	V	V	D	G	D	A	L	Q	L	A	G	R	G	S	W	F	V	A	T	T	E	E
Template Known Secondary structure			G	G	G	G		G	G	G											T	S					S																									T	T	S	S		T	T				T	T						T	T	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	L	Q	R	R	V	N	D	K	E	L	M	I	T	A	A	L	P	G	S	G	E	W	G	T	Q	R	E	A	L	A	F	E	Q	A	A	V	A	A	E	T	E	L	Q	A	L	L	V	R	E	K	V	E	A	A	R	R	A	M	L	L	Y	P	Q	Q	L	S	W	N	W	W	D	D	V	T	V	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	E	L	Q	R	R	V	N	D	K	E	L	X	I	T	A	A	L	P	G	S	G	E	W	G	T	Q	R	E	A	L	A	F	E	Q	A	A	V	A	A	E	T	E	L	Q	A	L	L	V	R	E	K	V	E	A	A	R	R	A	X	L	L	Y	P	Q	Q	L	S	W	N	W	W	D	D	V	T	V	E	I
Template Known Secondary structure											T	T	S										B	S			S													T	T	T											T	T		B						S														T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	W	L	P	A	G	S	F	A	T	S	V	V	R	E	L	I	N	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	W	L	P	A	G	S	F	A	T	S	V	V	R	E	L	I	N	T	T
Template Known Secondary structure							T	T								T	T	T		B		.
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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