|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | P | I | R | A | R | K | R | V | R | K | Q | V | S | . |
. |
. |
D | G | V | A | H | I | H | A | S | F | N | N | T | I | V | T | I | T | D | R | Q | G | . |
N | A | L | G | W | A | T | A | G | G | S | G | F | R | G | S | R | K | S | T | P | F | A | A | Q | V | A | A | E | R | C | A | D | A | V | K | E | Y | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . | . |   |
|
|
|
|
|   |   |
|   |
|
|
|   |
|
|
|
|
|   |   |
| . |   |   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   | . | . | . | . |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|
Template Sequence |   |
R | R | K | L | R | T | R | R | K | V | R | T | T | T | A | A | S | G | R | L | R | L | S | V | Y | R | S | S | K | H | I | Y | A | Q | I | I | D | D | S | R | G | Q | T | L | A | A | A | S | S | A | A | L | K | S | G | N | . |
. |
. |
. |
K | T | D | T | A | A | A | V | G | K | A | L | A | A | A | A | A | E | K | G |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | S |
| S | T | T | T |
| S |  |  |  |
|
|
| T | T | S | S |
|
|
|
|
|  |  |  | T | T | T | T |  |  |
|
|
|
|
| S |
| S |
|
| T | T |
| . | . | . | . | S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |
|
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | |
|
|
|
. | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
. | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
I | K | N | L | E | V | M | V | K | G | P | G | P | . |
G | R | E | S | T | I |
Query Conservation |   |
|
|   |
|   |
|   |   |
|
|   |
|   | . |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|
|
|   |
|   |   |
|
|
|
|
|   |
|   |
Template Sequence |   |
I | K | Q | V | V | F | D | R | G | S | Y | K | Y | H | G | R | V | K | A | L |
Template Known Secondary structure |   |
|
|
|
|  |  |
|
|
| S | S |
| S |
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
  |