Job Description P0A7R9 Confidence 100.00% Date Thu Jan 5 11:06:06 GMT 2012 Rank 4 Aligned Residues 116 % Identity 43% Template c2zkqk_ PDB info PDB header:ribosomal protein/rna Chain: K: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.																																	.	.	.
Query SS confidence																																														.																																	.	.	.
Query Sequence		R	K	Q	V	S	D	G	V	A	H	I	H	A	S	F	N	N	T	I	V	T	I	T	D	R	Q	G	N	A	L	G	W	A	T	A	G	G	S	G	F	R	G	S	R	.	K	S	T	P	F	A	A	Q	V	A	A	E	R	C	A	D	A	V	K	E	Y	G	I	K	N	L	E	V	M	V	K	G	.	.	.
Query Conservation																																														.																																	.	.	.
Alig confidence																																														.																																	.	.	.
Template Conservation
Template Sequence		E	G	E	N	V	F	G	V	C	H	I	F	A	S	F	N	D	T	F	V	H	V	T	D	L	S	G	K	E	T	I	C	R	V	T	G	G	M	K	V	K	A	D	R	D	E	S	S	P	Y	A	A	M	L	A	A	Q	D	V	A	Q	R	C	K	E	L	G	I	T	A	L	H	I	K	L	R	A	T	G	G
Template Known Secondary structure						S	B									S	S									T	T									S	T	T	S	S			T	T	T	T	T	T	S															T	T	T	T				B							S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
							89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	P	G	P	G	R	E	S	T	I	R	A	L	N	A	A	G	F	R	I	T	N	I	T	D	V	T	P	I	P	H	N	G	C	R	P	P	K	K	R	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		N	R	T	K	T	P	G	P	G	A	Q	S	A	L	R	A	L	A	R	S	G	M	K	I	G	R	I	E	D	V	T	P	I	P	S	D	S	T	R	R	K	G	G	R	R
Template Known Secondary structure		B	T	T	B				T	T												T				S											S		S			S		T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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